Pseudomonas mendocina NK-01: MDS_2019
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Entry
MDS_2019 CDS
T01473
Name
(GenBank) RNA polymerase sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
pmk
Pseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_2019
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MDS_2019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_WhiA
DUF6456
DUF3562
AftA_C
Motif
Other DBs
NCBI-ProteinID:
AEB58050
LinkDB
All DBs
Position
2229728..2230300
Genome browser
AA seq
190 aa
AA seq
DB search
MNVPLTDDDAALLRRYRRGDAAAFNALYQRHRPGLFRFLLGLCGDHALAEEVFQETWMSL
IRSQSEQREAVLFKTWLYQIARNRLIDHWRKTGRHQAGHDEYDEGQHAQADPRPGPEQQW
SLSRDSERLQAALADLPEDQREVFLLRAHGDLELNEIAELTRTPAETVKSRLRYALQKLR
RLLATEELSA
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgtacctctcacggatgacgacgccgctctattgcggcgttaccgccgcggcgat
gccgcggccttcaacgcgctgtaccagcgtcatcggccgggcttgttccgctttctgctc
ggcctgtgtggcgaccatgccctggccgaggaagtgttccaggaaacctggatgagcctg
atccgcagccagagcgagcagcgcgaggcggtgctgttcaagacctggctgtaccagatc
gcccgcaaccgcctgatcgaccactggcgcaagacgggccgtcatcaggccggacatgac
gagtatgacgaaggccagcacgcccaggccgacccgcgacccggccccgagcagcaatgg
agcttgagccgcgatagcgaacgactgcaggcggcactggccgatctgccggaagatcag
cgcgaggtgttcctgttgcgtgctcatggcgacctggaactgaacgagattgccgagttg
acccgcacaccggccgagacggtcaagagccgtctgcgctatgccctgcagaaactgcgc
cggctgctggccaccgaggagttgtccgcatga
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