KEGG   Paenibacillus mucilaginosus 3016: PM3016_6910Help
Entry
PM3016_6910       CDS       T01757                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmq  Paenibacillus mucilaginosus 3016
Pathway
pmq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PM3016_6910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmq03400]
    PM3016_6910
Enzymes [BR:pmq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PM3016_6910
DNA repair and recombination proteins [BR:pmq03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PM3016_6910
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: AFC33507
UniProt: H6NQN9
LinkDB All DBs
Position
8115177..8116127
Genome map
AA seq 316 aa AA seqDB search
MEWQPIVPFEPIRTETAPSGDGWVGQIKWDGTRILTYASGGTVRLFNRKGHERTLQYPEL
LDLSSYCTAESVILDGEVIAIADGRPNFQEVMRRDSVRKAQHLALAQKQVPISYMIFDMP
YLDGEWITDKPLRERQRLLQERVRGNATVQLVPSVAGMNDLFGVMKQHKMEGIVCKDLES
KYLIGGKDKRWQKMKIYNDLVAVVGGVTHRAGQVNALMLGLYDAEGRLWYIGHAGTGRFT
QQTWRELTEKVREMTLPERPFVNVPERSKDAVWIKPLLTVKVSYMEWTAGRTLRQPSIQA
LVGAQPADCTFGQLDG
NT seq 951 nt NT seq  +upstreamnt  +downstreamnt
ttggaatggcagcccatcgttccgttcgagcccatccgcaccgaaaccgcgccctccggg
gacgggtgggtcgggcagatcaagtgggacggcacccgtattctcacctatgcttccggc
ggcaccgtcaggctcttcaaccgcaagggccatgaacggacgctgcagtaccccgagctg
ctcgacctgtcctcctactgcaccgccgaatcggtcattctggatggagaggtcattgcc
atcgcggacgggcgcccgaacttccaggaggtcatgcggcgcgacagcgtccgcaaggcc
cagcacctggcactggcgcagaagcaggtgcccatctcctacatgatcttcgacatgccg
tatctggacggggaatggatcaccgacaagccgctgagagagcggcagcggctgctgcag
gagcgggtccgcggcaatgccaccgtgcagctggtgccgagtgtcgccggcatgaacgac
ctcttcggcgtaatgaagcagcacaagatggagggcattgtctgcaaggatctcgagagc
aaatatctgatcggcggtaaagacaagcgctggcagaaaatgaagatctacaacgatctg
gtggcggtcgtcggcggggtcacccaccgggcgggccaggtcaacgcgctgatgctcggc
ctgtacgacgccgaaggccggctgtggtatatcggccacgccggtaccgggcggttcacc
cagcagacttggcgggagctcacggagaaggtgcgggagatgaccctgcccgagcgaccg
ttcgtcaacgtgcccgaacggagcaaggatgcggtgtggatcaagcccctgctcacggtc
aaagtgagctatatggaatggaccgccggccggacgctgcgccagccgagcatccaggct
ctggtcggcgcccagccggcggactgcacgttcgggcagctggacggctga

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