Podarcis muralis (common wall lizard): 114601359
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Entry
114601359 CDS
T06059
Symbol
SMCHD1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pmua
Podarcis muralis (common wall lizard)
Brite
KEGG Orthology (KO) [BR:
pmua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmua03036
]
114601359 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pmua03400
]
114601359 (SMCHD1)
Chromosome and associated proteins [BR:
pmua03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114601359 (SMCHD1)
DNA repair and recombination proteins [BR:
pmua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114601359 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMC_hinge
HATPase_c
Laminin_II
DUF1664
Motif
Other DBs
NCBI-GeneID:
114601359
NCBI-ProteinID:
XP_028594401
LinkDB
All DBs
Position
7:48618023..48694023
Genome browser
AA seq
2326 aa
AA seq
DB search
MAAAEEAAERESGGGEVLSVYVFDRRQADSDGEDKVVKCPEGNYGAFRSAVCQVFGISSK
ETFIVTTTNRIRITNENFGGMVKDGMTFYLLQSVDQSLPSATKERIDFLPHYDTLVKSGM
YEYYASEGQNPLPFALAELIDNSLSATSENTAVRRIQLKLLFDDSQGKPAVAVIDNGRGM
SSKQLNNWAVYRLSKFTRQSDMESDHSGYVRPSAVPRSLNSDISYFGVGGKQAVFFVGQS
TRMISKPADSKDVHELVLSKEDFEKKEKNKEAIYKGYIRNRKPSDSSHIVNDDERFLHNL
IMEEKDKEGFTAVVITGVQPEHVQYLKNNFNRWTRQLSHIYHYYIHGPKGNEINLPMKEA
RTFNNIDIEISMYEKGKTPKIVNLREIKDDMQTLYINTAADSFEFKAKVEGDGVVEGVIR
YHPFLYDKETYPDDPCFPSKLKDDNDDEECYVIEKGARGKRPIFECFWNGRLIPYTTVEN
FEWCALPKRGLAPSECYNRISGVLFTNDRFQVSTNKLTFMDLELKLKDRNTIFTRIVNGQ
EQRMKIDRDFSLWLKECHEKHDKQIKFIHFKEIITRTELHSKRLQSPWSTYLAIEWDGKT
YKAGQLVKTIKTVPLLYGRIRKFFLYGDHDGDVYATGGEVQIVLEPEELYDETKVIPICK
LDRSVSSKAVKKYIEEEMSKLPDRLSVTWPDGDELLPNETKLAGATIGALRIEILNKKGE
AMQKLPGSGHGAAKKLLVELKVIFHSHNGDKEIISHISQHGGKWPYWFKKMENITKLGSY
TLKLQVVLNESNADTFAVRPLPSETFKFNIIEGKPQKFSIGLLDSPFRVGHPFNIPLDVQ
DEFGHATXLTDDIVPILEASGLTLQYEEIDKGPNCAIKGVTAKRPGKQLPGKGPPWQLNV
KPDTDTLKIENGTAFPFQVEVLDEVGNITAQPKLIVHCKFSGAPGLPVYAVDCSSGGINI
LTGPVLHVENIKKDQTLKARFEIPSCKSVPPLEKTIKLLPSRSVARLQIFSIEGEKAMQI
QHQDEINWVAGDVMQNLIFHMYDEGDREILITPTLAEKVKEPEELYDETKVIPICKLDRS
VSSKAVKKYIEEEMSKLPDRLSVTWPDGDELLPNETKLAGATIDSWVLVVFWHSPFRVGH
PFNIPLDVQDEFGHATHLTDDIVPILEASGLTLQYEEIDKGPNCAIKGVTAKGLVNNYQG
KNFNLKVTLPGLKEECQILKIKLLPGPPWQLNVKPDTDTLKIENGTAFPFQVEVLDEVGN
ITAQPKLIVHCKFSGAPGLPVYAVDCSSGGINILTGPVLHVENIKKDQTLKARFEIPSCK
SVPPLEKTIKLLPSRSVARLQIFSIEGEKAMQIQHQDEINWVAGDVMQNLIFHMYDEGDR
EILITPTLAEKVKVNWTPKINREQLVNGLLPDVKVPTSVNDVHYYVVSFHDGHVSLESAF
TIRPLADEPKHIKCKLKGSNTIQMGEKLQEEIEVMITDQHGNHIQNLTSTCLDSLKIDGS
GLDKSELRSVWQADTQTICVTGIRFKPGPPGTKELCFAWREFSHFLRLNLIAGPPAKLVL
VDWTELENPVSVINGKELQKPLIVQLCDQWNNPSSEPDVKINLLKAGNLKIIPSNQQHKT
DENGRANFGVLRIHAPWGEHTLQFKATYNKNTLNCPVIRLNVQPDPERPVHLNVKYDTNA
TLVAGNTFPDFIISVISEADNIIKNISPGIIYMKMWEGSRTVPQNVTTYVCTKTNDDDSS
FFYFRQKMVPEKVGTYSIQFAFAIDKINILNSEQIVFEVEPNEPTQLMPRILPNTPTVSN
AQSVGSRTLVKDLTLVIMDEYKNCTGNDLDGKIIAKIRSSTDKVKDIPLFQGKTDTVEFP
FHRGIVEIEDLVLAENSPGRDSTEYILVFEPDIPILNRRLEPYCLPFMFYDGYKKQQQMA
TLSKERDELSKSITAYRDTFDTTNQLLTEMKRQVQEAETREAQLKDKLKRLRIDIPQTNV
LHFACSLLKEKISEREGIMKQPRRTCTCSDYPKDKDVLGKISHLAQIEDNEAAKVISWHL
ASDMDCVVTLTTAAARRIFDETKGQQQVLPLDSIYRRSLPDWNRPLPHLQNGRNTFKAIG
NPVFARNLLTFPEHTENCQTVFGMLLGDAILIDNLDAANHYRKELVKNTHCPALLTRDGE
RIRSNGKFGGLQNKAPPMDKLRGMVFGAPLPQRCKILSEQIDLLQQYQKAVAWLTNKKAD
LDFHEQSYNSPEMNKKKKELADQEKRLKAIEQELGITSSGRCSKSSVHMEELDTFDNPSP
PKRMRRETAKRSLSPEEWVSSPPMKKQQQRATDTSDVNGTARKKKP
NT seq
6981 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggctgaggaggctgcggagagggaaagcggcggcggagaagtcctgtctgtc
tacgtgttcgaccggcgccaggcggattcggacggcgaagacaaagttgtgaagtgtcct
gagggaaactacggcgccttccgtagcgccgtgtgccaggtatttggcatttcctccaaa
gaaacatttattgtcacaaccacaaatagaatacggatcacaaatgaaaactttggggga
atggttaaagatggcatgaccttctatttgctacaatcagttgaccagtcactcccctct
gcaacaaaagagcgtattgatttcctaccacattatgatacacttgtgaaaagtggaatg
tatgaatactatgctagtgaaggacaaaatcctcttccgtttgctcttgcagaattaatt
gataactctttatcagctacttctgaaaatactgccgtccggagaatacagttaaagctg
ttatttgatgactctcaagggaagccagccgttgccgtgattgataatggaagaggcatg
agttctaaacaactgaataattgggctgtgtatcggttatcaaagtttacacgacaaagt
gatatggaaagtgaccattcaggatatgtacgtccttcagcagtaccccgcagtttaaac
agtgatatatcatattttggggttggtggtaaacaagcagtgttttttgttggacagtct
accagaatgataagcaaacctgcagattctaaagatgttcatgagcttgtactttctaaa
gaagattttgaaaagaaagagaaaaacaaagaagctatatacaagggatacattcgaaac
agaaagccatctgactcttcccatattgttaatgatgatgaacgattcctgcacaatctt
atcatggaagaaaaagacaaagaaggtttcactgcagtagttattacaggagtacagcca
gaacacgtgcagtacctgaaaaacaattttaaccgttggaccaggcaactatcacacata
taccattactatatccatggaccaaaaggaaatgaaattaatttgccaatgaaggaagca
agaactttcaacaatattgatattgagatttcaatgtatgaaaaagggaagacacctaag
attgtgaatcttagagaaattaaagatgatatgcagacattatatataaatacggcagca
gatagttttgagttcaaggcgaaagttgaaggagacggtgtagtggaaggtgttatacgc
tatcaccctttcttgtatgataaagaaacgtatcctgatgatccttgctttccttcaaaa
ttaaaagatgacaatgatgatgaagaatgctatgtaatagaaaagggagcaagagggaaa
aggcctatttttgaatgtttttggaatggaagactaataccatacacaactgttgagaac
tttgagtggtgtgctctgcccaagagaggtcttgccccatctgaatgttacaacagaatt
tctggtgtgttatttacaaatgacagatttcaggtcagcacaaacaaactgactttcatg
gatttggaattgaagttaaaagacagaaacacaatttttacaagaatcgtcaatggacag
gagcaaagaatgaaaattgacagagacttttcattgtggctcaaggagtgccatgaaaaa
catgacaaacaaataaaattcatacacttcaaagaaataattacacgcactgagctgcac
tctaagcgcttgcagagtccctggtctacatatttggcaatagaatgggatggaaagaca
tacaaagctgggcagttggtaaaaacaattaaaacagttccattactctatggcagaata
aggaaattttttctatatggcgatcatgatggagatgtgtatgcgacaggaggagaggtt
cagatagttttggaacccgaggaactctatgatgaaaccaaggttataccaatatgcaaa
cttgatcgttcggtttccagcaaagcagtgaagaaatacattgaagaggaaatgtccaag
cttcctgataggttgtcagtaacatggcccgatggagatgaattattaccaaatgaaact
aagcttgcaggagctaccataggagcactaagaattgaaatattgaataaaaaaggagag
gctatgcaaaagcttccagggtcaggtcatggagcagcgaagaaattgcttgtggaactt
aaggtcatttttcattcccataatggagataaggaaatcatttctcatatcagtcaacat
gggggtaaatggccttactggttcaaaaaaatggaaaacattactaaacttggatcctac
acattgaaactgcaagtggtgttgaatgaaagcaatgccgacacttttgcagtaagacct
cttccatcagaaacatttaaatttaatataatagagggcaagcctcagaagttttcaata
ggtcttttggattccccatttcgagttgggcatccattcaatattcctctagatgtccag
gatgaatttggtcatgctaccnatctgacggatgatattgtgccaattcttgaggctagt
ggcttaacattacagtatgaagaaatagataaaggaccaaattgtgccattaagggtgta
actgctaaaaggcctggtaaacaattaccagggaaaggtccaccatggcagctaaatgtc
aaaccagacactgacacattgaaaattgaaaatggaacagcatttcctttccaggttgaa
gtgctggatgaagtaggcaacataacagcacaaccaaaactaatagttcattgcaagttt
tcaggagctccaggccttcctgtatatgctgtggattgcagcagtggtgggataaatatc
ttaactggaccagttctacatgtagagaatataaagaaagatcagacgcttaaagcaagg
tttgaaatacctagttgtaaaagtgtaccaccattggagaagactattaaattgcttccc
agtagatctgttgcaagattacaaatttttagcatcgagggagaaaaagctatgcagatc
caacaccaggatgaaattaactgggttgcaggtgatgtgatgcagaatctcattttccac
atgtatgatgaaggggacagagaaatattaatcactcccacgctggccgagaaagttaag
gaacccgaggaactctatgatgaaaccaaggttataccaatatgcaaacttgatcgttcg
gtttccagcaaagcagtgaagaaatacattgaagaggaaatgtccaagcttcctgatagg
ttgtcagtaacatggcccgatggagatgaattattaccaaatgaaactaagcttgcagga
gctaccatagactcatgggtgctagtagtcttttggcattccccatttcgagttgggcat
ccattcaatattcctctagatgtccaggatgaatttggtcatgctactcatctgacggat
gatattgtgccaattcttgaggctagtggcttaacattacagtatgaagaaatagataaa
ggaccaaattgtgccattaagggtgtaactgctaaaggcctggtaaacaattaccaggga
aagaacttcaatctgaaagttactcttcctggcctgaaggaggaatgccaaattttgaaa
attaaacttcttccaggtccaccatggcagctaaatgtcaaaccagacactgacacattg
aaaattgaaaatggaacagcatttcctttccaggttgaagtgctggatgaagtaggcaac
ataacagcacaaccaaaactaatagttcattgcaagttttcaggagctccaggccttcct
gtatatgctgtggattgcagcagtggtgggataaatatcttaactggaccagttctacat
gtagagaatataaagaaagatcagacgcttaaagcaaggtttgaaatacctagttgtaaa
agtgtaccaccattggagaagactattaaattgcttcccagtagatctgttgcaagatta
caaatttttagcatcgagggagaaaaagctatgcagatccaacaccaggatgaaattaac
tgggttgcaggtgatgtgatgcagaatctcattttccacatgtatgatgaaggggacaga
gaaatattaatcactcccacgctggccgagaaagttaaggtaaattggactccaaagatt
aatagagaacagttggttaatggcttattacctgatgtgaaggtaccaacatctgtaaat
gatgtgcactattatgtagtttcattccatgatgggcatgtatctttggaaagtgcattc
acaataagaccacttgctgatgagccaaaacatattaaatgcaaattaaaaggatctaat
acaatacaaatgggtgaaaaactacaagaagaaattgaggtaatgattacagatcagcat
ggaaatcacattcagaacctgacatcaacttgtttggattccttgaaaatagacggtagt
ggtctggataaatcagaattgagaagtgtttggcaggcagatacacaaactatttgtgtc
acaggaatcaggtttaaaccaggtcctcctggaaccaaagaactgtgttttgcttggcgt
gaattttctcatttcttgagactaaatttaattgcaggacctccagctaaattggtgctt
gtggactggacagagttagaaaaccctgtgtcagtgattaatggcaaagaactacagaag
ccacttatagtccagctgtgtgatcagtggaataacccatcttctgaacctgatgtcaaa
atcaaccttttaaaggctgggaacttaaagattattccttcaaaccagcagcataaaaca
gatgaaaatggcagagcaaatttcggagttcttagaattcatgctccttggggagagcat
acattgcaatttaaagccacatacaacaagaacacactaaactgtccagtaatcagatta
aatgttcagcctgaccccgagagacctgtacatttgaatgtcaagtatgacacgaatgct
acccttgtagctggaaacacctttcctgatttcattattagtgttatttctgaagctgat
aacattattaaaaatataagcccaggaataatttatatgaaaatgtgggaaggtagtaga
actgtacctcaaaatgttacaacgtatgtctgtaccaaaacaaatgatgacgacagtagc
tttttttacttcaggcaaaaaatggttccagagaaagtgggcacctacagcatccagttt
gcatttgccattgacaaaataaacattcttaacagcgaacagattgtttttgaagtggag
cctaatgaaccaacacagctgatgccaagaattttgccaaatactcctaccgtttctaat
gctcagagtgttggcagtcggacccttgtcaaagacttgactcttgttattatggatgaa
tacaaaaactgcactggcaatgacttggatgggaaaatcatagctaaaattcgaagttca
actgataaagttaaggacatccccctgtttcagggtaaaacagatacagttgagtttcca
tttcacagaggaattgttgaaattgaggatcttgtgctggcagaaaatagtccagggaga
gatagtactgaatatattcttgtatttgagccagatatacccattttgaatcgacgtttg
gaaccttattgtctcccttttatgttttatgatggttataagaaacaacagcagatggcc
acactttcaaaagagagagacgagctttctaagtcaataactgcatacagagatacgttt
gacaccactaatcagcttctaactgaaatgaagcgtcaagttcaggaggctgaaacaaga
gaggctcagctgaaggataaactgaaaagacttcggattgatatacctcagactaacgtt
ctgcactttgcttgttctctactaaaagagaaaatctctgagcgggaaggaataatgaaa
caacctagaagaacatgcacatgttctgattatcccaaagacaaagatgttttgggcaag
atttcacacttagcacaaattgaagataatgaagcagcaaaggttatttcttggcatttg
gcaagtgacatggactgtgtagtcactttgactactgctgcagctcgtcgtatctttgat
gaaaccaaaggtcagcagcaggtgttgcctcttgattctatttataggaggagtcttcca
gactggaacaggcctttacctcacttacaaaatggaagaaatactttcaaggctatagga
aatcctgtgtttgccaggaacttgctaacatttccggagcacacagagaattgccagaca
gtgtttgggatgcttttaggagatgccattcttattgacaatttggatgctgccaatcat
tacagaaaagagcttgttaaaaacacacattgcccagcattattgacaagagatggagag
agaattcgtagcaatggaaagtttggaggtcttcagaataaagcccctcccatggataag
cttcgaggaatggtttttggagcacctctgccgcaacgatgcaaaattctctctgaacag
atagatctccttcagcagtaccagaaagcagttgcatggcttactaataagaaggcagac
cttgatttccacgagcaatcatataatagtccagaaatgaataaaaagaaaaaagagctt
gcagaccaggaaaagagactcaaggcaatagagcaggaattgggcattacctcatctggt
cgatgctccaaatcttcagttcacatggaagaacttgatacatttgacaatcctagccct
ccaaaaagaatgcggagagaaacagcaaaacggtcactcagtccagaagaatgggtatca
tctcctcccatgaagaaacagcagcaaagagcaacagatacatcagatgttaatggaaca
gcccgaaaaaagaaaccatag
DBGET
integrated database retrieval system
