Prunus mume (Japanese apricot): 103320423
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Entry
103320423 CDS
T03196
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03420
Nucleotide excision repair
pmum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103320423
09124 Replication and repair
03420 Nucleotide excision repair
103320423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmum04121
]
103320423
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103320423
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
103320423
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
103320423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
103320423
NCBI-ProteinID:
XP_008220328
LinkDB
All DBs
Position
LG2:complement(10841032..10845172)
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AA seq
445 aa
AA seq
DB search
MWREIGDREAGKLRPNSFSNRIKSNRIQTLQLSNRKDIVSPHRGSVNSLQVDLTEGRYLL
SGASDASAAVFDIQRGTDYEGGGVIRKHKCLFMVDKQHEQGHKYAVSSAIWYPVDTGLFV
TGSYDHHINVWDTNTTQVVMDFKMPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP
PILKRSTMIKGSTAKSLSASQSSFAKARTPQMKLMNAKQSPIGKIPVKGSLKQRLHPGML
SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRLQTSKPI
QLATSQNLALVFVPCMTAVKAFDMWSGKTSLTFRGHYEHVNCCWFSLQDQELYTGGNDRQ
ILVWSPSRSVSDEDEGPKDEDNWSD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgggaaatcggagacagagaagcgggcaagcttcgcccaaattcgttctcgaat
cggattaagtcaaatcggatccaaacgctccaactgtcgaaccgcaaagacatcgtctcc
cctcaccgaggctccgtcaactctctccaggttgatttgactgagggccggtacttgtta
tccggtgcttcggatgcttcggcggcggtgtttgatattcagcgggggactgattatgaa
ggaggcggcgttatcagaaagcacaagtgcttgttcatggtggataagcagcacgagcag
gggcacaagtatgcggtgtcctcggccatatggtatccggtggacacgggactatttgtt
acgggttcgtatgaccatcacattaatgtttgggatacgaatacgacgcaggtggtgatg
gactttaaaatgcctggaaaggtttataggactgccatgtcccccttggcaacttcgcac
atgctcattgctgctgggactgaagatgttcaagttcgtctctgtgatattgcctctgga
gcttttgctcacaccttgtctggtcaccgtgatggtgtaatgacggtggaatggtctact
tctagtgagtgggttttggttacaggtggatgtgacggtgcaatacgtttttgggacatt
agacgtgctggatgttttcttgttttagatcagtcccagtctcagcttgggagacgtcca
cccatcttgaaacgctctaccatgattaagggttcaacagctaagtccttgtcagcaagt
caaagttcatttgcaaaagcacggacaccacaaatgaaactcatgaatgcaaagcaatca
cctatcggtaaaattccagtaaagggatctctgaagcaaagattacatccagggatgttg
tctagtcaggatcgtgcgactgctcattatggtgctgttactgggctaaaagttactgaa
gacggcatgtatctcttaagtgcaggttctgattcaagattaaggttgtgggatgtagaa
tctggctgcaatactttggtgaactttgaaactgtgcgtctgcaaaccagcaagcccata
cagttagccacaagtcagaatttggctcttgtttttgtaccatgcatgacagctgtaaag
gcattcgatatgtggtcaggtaaaacatccctgacatttcgtggtcactatgaacatgtg
aactgttgctggtttagtttgcaggatcaggaattgtacaccggtggcaatgatagacaa
attctagtctggtcgccatccagatcagtttccgatgaggatgaaggacccaaggacgag
gataattggagtgactag
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