KEGG   Prunus mume (Japanese apricot): 103323695Help
Entry
103323695         CDS       T03196                                 

Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    103323695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103323695
Enzymes [BR:pmum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103323695
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     103323695
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C BRCT PTCB-BRCT RNA_ligase DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID: 103323695
NCBI-ProteinID: XP_008223923
LinkDB All DBs
Position
LG2
AA seq 1130 aa AA seqDB search
MSEETKFSVLCSLFNWMQRSKTSTLKRSKFRKFLDTFCKPADYFDSIRLILPSLDRERGS
YGLKESVLATCLIDALGMVLQRRQGVSSGGLTIKELNDLLDRLASSENRSEKTSVLSTLI
KKTNAQEMKWIVMIILKDLKLGTSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRH
KRQDIEVGKAVRPQLAMRVGDATIAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRN
FLDHPEYGHAMSDIVIQNVLADRCILDGEMLVWDTSSNRFAEFGSNQEIAKAARDGLDSD
RQLCYVAFDILYVGDTSVIHQSLKERHELLQKFVKPLKGRLEILVPNGGLNTHRSEGEPC
WSLIARSVDDVERFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDV
LIIGGYYGSGRRGGEVAQFLVGLAERAVPNTYPRRFVSFCRVGTGLSDEDLEAVATKLKP
YLRKYEYPKKAPPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIRSEVFSAPYSLR
FPRIDRVRYDKPWHECLDVESFMELVHSSNGTTQRGTDYGALQDTKTKHKTSSRKEEKRN
LSVVPSHLVQTDVSSVKEDTLLFSNMMFYFVNVPPTNSLDSLHKVVVENGGTFSMNLNNA
VTHCVAADSKGIKYQAAKRHGDIIHFSWVLDCCSQKRLLALQPKYYLFISESSKKKLQEE
IDEFSDSYYWDLDLADIKQLLSNMYRSADSKTINHYKKKYCPMEKWSRFHGCCIYFNPST
HSLKPDWEVLLRFTLRRLKIQVLISGGRVTDSIAHATHLVVLSVQGLDVDFETLLQSFTE
SEKRFLHNKKLHIVGSQWLEDCLERDQRLQEETYSLKPNGLEECSIEEWKHDMDLEEAPS
VVDTLQINNSSSSPNQEGKEIGGKEAPENYRILASPERESKRKRGRPALTSMNKGKTGVN
QARRTRVRIGRKPAKISGNESDEGGSHDNTLLVEEVDKEERKHGMMSDASLDIQENEAIR
DSESLQRDNAAVQEVAEDIRFEDHSYQIPDVKMIEKCNIEDSGKPEKLEVMADPVQAMLF
DMIPSLAMKKVETTNTSIEKEKPAVDLNAGPSKKKKVSYKDVAGELLKDW
NT seq 3393 nt NT seq  +upstreamnt  +downstreamnt
atgagtgaggagaccaagttcagcgtcctatgcagcctcttcaactggatgcaaagaagc
aaaacctcaaccctaaagcgctccaaattccgcaaatttctcgacactttctgtaaacct
gctgattatttcgattcgattcgcctaattcttcccagcctcgaccgcgagcgcggcagc
tatggccttaaggagtctgtgctcgccacctgcctcattgacgctctcggcatggtgctg
caacgtagacaaggagtgagttcaggtggattaacaatcaaggagttaaatgacttgctt
gatcgtttagcttcaagtgaaaataggtcagagaagacttcagttctttctacattgata
aagaagacaaatgcacaggaaatgaagtggattgtcatgattattcttaaagatctgaag
ctgggaactagtgaaaagagcatttttcatgaatttcatccagatgctgaagacttgttt
aatgtcacatgtgacttgaaattggtttgtgaaaagctgagggatagaaatcagcgtcat
aagcgccaggacattgaagttggaaaagctgtacgcccacaactagctatgagagttggt
gatgcaactattgcatggaaaaagcttcatggtaaggaagtggttgttgagtgtaaattt
gatggggatcgcatccaaattcataagaacggaactgaaatacattacttctcaaggaat
tttcttgatcaccctgaatatggacatgcaatgtcagacattgttatacaaaatgttctg
gctgataggtgtattcttgacggtgagatgttggtctgggacacatcttccaatcgtttt
gctgagtttggttcaaatcaagaaatagccaaggcagcaagggatggacttgacagtgat
agacagttgtgctatgttgcatttgatatcctctatgttggagatactagtgtaattcac
cagagcttgaaggaacggcatgagcttctccagaaatttgtgaaacctttgaagggtcgt
ttagaaattttagtacctaatggtggtcttaacactcaccgttctgaaggggaaccttgt
tggtcgcttattgctcgtagtgtggatgatgtcgagaggtttttcaaagaaaccatcgaa
aatagagatgaggggattgttttgaaggaccttggttctaaatgggaacctagtgatcgg
agtggaaagtggttaaaattaaaaccagattacattcgtgcaggctctgatttagatgtt
cttatcataggcggatactacggttctggacgtcgtggaggggaggttgctcaattcttg
gtgggtcttgctgaacgtgcagtaccaaatacatatcctagaagatttgtatccttttgc
agagtgggcactggactttctgatgaggatctagaagctgttgccaccaaattaaagcct
tatttgaggaaatatgagtacccaaaaaaggctccaccaagtttttatcaagtaacaaac
aattcaaaagagagaccagatgtttgggttgaaagccccgagaaatcaataatactttct
ataacgagtgacatcagaactataaggtctgaggttttttctgcaccatacagcctgaga
tttccacgtattgatcgagttagatatgataaaccttggcatgaatgtcttgatgtggaa
tcatttatggagcttgtacattcaagcaatgggaccacacaaaggggaacggattacggt
gctctgcaggatactaaaacgaaacacaagacatcctctagaaaggaagaaaaaagaaat
ctttctgttgttccctctcatttagttcagactgatgtttccagcgtcaaggaggacaca
ttactattttcaaatatgatgttttactttgttaatgtgcctcccactaattctcttgat
tccttgcacaaagttgttgttgagaatgggggtactttctctatgaatttgaataatgca
gttacacactgtgttgcagctgatagcaaagggattaaatatcaggcagcaaagcgtcat
ggagatataattcatttctcttgggtgttggattgttgttctcaaaagagacttcttgcc
ttacagccaaagtactatctcttcatatctgaatcttcaaaaaagaagttacaagaagaa
attgatgaattttctgactcgtactactgggatcttgaccttgcagacatcaagcagctt
ttaagcaacatgtatagatctgcggattccaaaactatcaaccattacaagaaaaaatac
tgtccaatggagaaatggtctcgctttcatggctgctgcatttactttaacccatcaact
cattccttgaaaccggattgggaagtccttttacgattcacactcagaaggttgaagatt
caagttctcataagtggtggcagagtcactgacagtattgctcatgcgactcatttggta
gtcttgtcagtgcagggtcttgatgtcgattttgaaactttattgcaaagtttcactgaa
tcagagaaacgatttctgcataacaaaaagttgcatattgttggatctcaatggttggaa
gactgcttggaaagggaccagagactgcaagaagaaacatatagcttaaaacccaatggg
ttggaagaatgcagcattgaagagtggaaacatgacatggatctagaagaagcaccctct
gttgtggacactctgcaaatcaacaattcttcttcttctcctaaccaagaaggaaaagag
ataggaggcaaagaagctccagaaaactataggatcttggcctcacctgagagggaaagc
aaaaggaaaagaggaagacctgctctcacaagcatgaacaaaggaaaaactggtgtcaac
caagctcggagaacacgggtgcgcattggaaggaagcctgctaaaatatcaggaaatgag
tcagatgaaggtggctctcatgataacacattacttgtggaagaggttgataaggaagaa
aggaaacatggaatgatgagtgacgcaagtttagacatccaagaaaatgaagcaattaga
gattctgaatcattacaaagagacaatgcagctgtgcaggaggttgctgaagacattagg
tttgaggaccattcttatcaaattcctgatgtcaaaatgattgagaagtgtaatatcgaa
gacagtggaaagccggagaaacttgaagttatggctgatcctgttcaagccatgttgttt
gacatgattccaagtcttgctatgaagaaagttgaaactacaaatacgagtattgaaaag
gaaaaaccagcagtagatctgaatgcaggaccttcaaagaaaaagaaagttagctacaag
gatgttgctggtgagctgctcaaggattggtaa

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