KEGG   Prunus mume (Japanese apricot): 103326162Help
Entry
103326162         CDS       T03196                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03030  DNA replication
pmum03410  Base excision repair
pmum03420  Nucleotide excision repair
pmum03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103326162
   03410 Base excision repair
    103326162
   03420 Nucleotide excision repair
    103326162
   03430 Mismatch repair
    103326162
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmum03032]
    103326162
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103326162
Enzymes [BR:pmum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103326162
    6.5.1.6  DNA ligase (ATP or NAD+)
     103326162
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103326162
DNA replication proteins [BR:pmum03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    103326162
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     103326162
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103326162
   NER (nucleotide excision repair)
    Other NER factors
     103326162
   MMR (mismatch exicision repair)
    Other MMR factors
     103326162
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 103326162
NCBI-ProteinID: XP_008226585
LinkDB All DBs
Position
LG1
AA seq 789 aa AA seqDB search
MLSRSLCSCYCLRPRSLHHLTTSISLFRSKPSSLSLTLISLSPKNPNLRAMSSRPSAFDA
LMSGARAAAAKKKPQASPSKKRKTLEPNPIENPQLLLKPENGSPTQAPESKEVKEALESS
SNGGQVVPPAKKVCSAAGAQERTAELKSRIALLKKKAGDFDPKLMANWGEGERVPFAFVC
LAFDLIANETGRIAITDIVCNLLRTVMHTTPEDLVPVVYLAANRIAPAHEGLELGIGDAS
IIKALAEACGRTEAHVKKQYKELGDLGLVAKASRSSQSMMRKPDSLTVTKVFSTFRQLAK
ESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLAALGQAAVHAEKH
STPPSHIQSPIEEAAKIVKQVYSLLPDYDKIIPALLSGGVWNLPKTCSFTLGVPVGPMLA
KPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVVAV
SRLKKSSVTSFVLDCELVAYDREKQKILPFQVLSTRARKNVAMSDIKVDVCIFAFDMLYL
NGQPLIQEQLKVRRESLYDSFVEEAGFFQFATAITSNDIEEIQKFLDAAVDSSSEGLIIK
TLNKDATYEPSKRSLNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS
NNEEFQSICKIGTGFSEAMLEERSASLRTKVIPKPKSYYRYAETMNPDVWFDASEVWEVK
AADLTISPVHRAAVGIVDPNKGISLRFPRLVRVREDKPPEQASSSAQVAEMYSAQANTRS
NNQDDNEDD
NT seq 2370 nt NT seq  +upstreamnt  +downstreamnt
atgctctcccgatcattgtgttcatgctattgtctacgcccacgctctctccaccatctc
accacctccatttctctcttccgctccaaaccctcttctctctctctcaccctcatttcc
ctctccccgaaaaaccctaatcttcgcgccatgtcctctcgcccctccgccttcgacgct
ctcatgtccggcgctcgggccgccgccgccaagaaaaagccccaagcttcaccctccaag
aagcgaaaaaccctagaacctaaccctattgaaaacccccaattgctattgaaacccgaa
aatggcagtccaacccaagccccagaatccaaagaagtcaaagaagctctagaaagttct
agtaatggcggccaggtggttccccccgcgaaaaaagtgtgctcggcggcaggtgctcag
gagcggacggcggaattgaagagccgaatcgctctgttgaagaagaaagccggtgacttt
gacccgaaattgatggcgaattggggcgagggcgagagggttccgtttgcgtttgtttgt
ttggcttttgatttgattgctaacgagacgggtcggattgcaatcacggatatagtgtgt
aacctgttgaggactgtaatgcacaccacgcctgaggatttggtgcccgtggtttatctg
gcagcaaatcggattgcgccggcacatgagggattggagcttggaattggggatgcttcg
attatcaaggcgcttgcagaggcttgtgggaggactgaagcacatgttaagaaacaatac
aaggaattgggagatttgggtcttgttgcaaaagcaagccgttcatctcaatctatgatg
cgcaagcctgattcgttaactgtgaccaaggttttcagtacatttcgtcaacttgctaag
gaatctgggaaggatagtcaggagaagaaaaagaaccatatcaaggcacttcttgttgct
gccactgattgtgaacctcaatatctgatccgtttgcttcagacaaagttgcgaattggg
ttggcagagcagactctcttagctgcattgggacaagctgcagtgcatgctgaaaaacat
tctacaccaccttctcatattcagagtcctatagaagaggctgcaaagattgttaagcaa
gtgtactctctacttcctgattacgataaaatcatccctgcccttttaagtggtggtgtg
tggaatcttccgaagacatgtagctttactttgggtgtcccagttggacctatgctagca
aagccaactaaaggtgtatctgagattgtacagaagtttcaggatacagaatacacctgt
gaatacaagtatgatggagaacgcgcccagatacattacatggaggatggttctgttgag
atatacagtcgaaatgctgaacgaaacactggaaagttccctgatgttgttgttgcagtg
tcgaggttaaagaagtcatctgtaacgtcatttgttttggattgtgaattggttgcttat
gaccgtgaaaaacagaaaattcttcctttccaggtactcagcactagagctcgtaaaaat
gtggccatgagtgatattaaggtcgatgtctgcatatttgcttttgacatgttgtatctt
aatggacaaccactaattcaggaacaactgaaagttcgtagagagagtctttatgactct
tttgtggaagaagctggattttttcagtttgccacagcaataacatcaaatgatattgaa
gaaatacaaaagtttcttgatgctgcagttgattcaagttctgagggtttaattatcaaa
acattgaacaaagatgctacttacgagccttcaaagcggtcacttaactggctgaaattg
aagaaagattatatggagagtattggggactcactagacttggtgcctattgctgctttc
catggccgggggaaacgtacaggtgtctatggtgctttcctccttgcttgttatgatagc
aacaatgaagagtttcaaagcatttgtaaaataggcactggattctctgaagcaatgctt
gaagaacgttctgccagtctccgtactaaagtgatacccaaacctaagtcatactatcgt
tatgcagaaacaatgaatcccgatgtatggtttgatgcctctgaggtttgggaagtgaaa
gctgcagacttgactattagccctgttcatcgcgccgcagttggcatagtggatcctaat
aagggtatttctcttcgatttccacgtcttgttcgtgttcgggaggataaacctccagag
caagcctcatcatctgcgcaggttgctgagatgtattctgctcaagctaacactcgttcg
aacaatcaagatgacaacgaagatgattaa

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