Prunus mume (Japanese apricot): 103327108
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Entry
103327108 CDS
T03196
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103327108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmum03032
]
103327108
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103327108
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103327108
DNA replication proteins [BR:
pmum03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
103327108
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
103327108
Bloom's syndrome complex (BTR)
103327108
FA (Fanconi anemia) pathway
103327108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-GeneID:
103327108
NCBI-ProteinID:
XP_008227617
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All DBs
Position
LG3:complement(21927340..21939982)
Genome browser
AA seq
1223 aa
AA seq
DB search
MHRRESHMRQDRTELGQGSNSAQTPFKVSLSEHAKALDNFSSPNVLSSNFLFSLPTQKPH
AQEATAMSSMACRIQNIGRLPSAQVQKAWHALSNLQISHRNYTKPGKTVLVKDASSRYCR
DVGRTATPSLCDIDKSRTHMQTHQYINGTNSRNSEAATCLGNRFPSSNVNVADVGNFFGG
QSQVKASMVNNFDSRVPGGSFSNNSVHTSQIKHSAKVLVNDIDDDDEILENIDVDQIVEQ
YQSSCTPQPSISKLPPITPSIDKDNIARQEVTSLPPDLCSNCIHGFKIGLCPEAASHLQE
MKDTLITISNELLDDVNDLSPTRIEKLRQDRLQLNKKIQQLERYLCNNSLDEERRKSHFS
ASTATPRSFQYETPQAAAFRTDTVRFDSQVQSHNVPGDYERCNSSSVSFSSVDGFGFSSC
PVEREPYIPKFVEVNYIEGSNDNKWSSNNFPWTKKLEANNKKVFGNHSFRLNQREVINAT
MSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQVMLFFFFFSS
XXXXXXXXEIFRELNSEYCKYKLLYVTPEKVAKSDVLLRQLENLNARQLLARIVIDEAHC
VSQWGHDFRPDYQALGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNR
PNLWYSVIPKTKKCLDDIDKFIKENHYDESGIIYCLSRMDCEKVAERLQECGHKAAFYHG
SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG
RDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPLASGYNRTNTANSGRVLETNTENLLRM
VSYCENDVDCRRILQLIHLGEKFDCTTCKKTCDNCLKIKSFVEKDVTGIAKQLVELVKLT
GQQFSSSHILEVYRGSFSQFVKKHRHQTVSLHGVGKHLAKGEASRVLRHLVTEDLLSEEV
KKSDVYGSVSSILKVNELKACELFSGRKTILIRFPSSVKASKQKNSEVISAKGSLTSGKQ
SPPNIGTEQPQSKANSDLSTKIFTSLKMLRTNLVRESADGVMAYHIFANTTLQNMSSRIP
RTKEELLEINGIGKGKLAKYGDRILETIEAAIKEYYKTDKNSTSCNDSNDMKRKRDGNNN
GNENFDDDDFTKSTDRSRKKAPKRQNKTIEAYSYAEPDYPQLIDDELDLYCYDFEVNASD
MKTNQNAGGRVLPQWSTPGNGRQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgcataggagggaatcacatatgaggcaagatcgtaccgaattgggtcaaggttccaac
tctgcccagacgccgtttaaagttagtttgtcggaacatgccaaagcacttgataatttc
tcaagccctaatgttttgagctcaaatttccttttttccttaccaacacaaaaacctcat
gcgcaagaggcaacggctatgagctcaatggcttgccgaattcagaatattggaagatta
ccaagtgcacaagttcaaaaggcttggcatgccctttccaatcttcagatttctcatagg
aactacacaaaacctggaaaaactgttctagttaaggatgctagttccaggtattgtcgt
gatgttggaagaactgctacgccaagcttatgtgacattgataagagtcgcacacatatg
caaacacatcaatacattaatggaaccaattccaggaacagtgaagctgcaacctgtttg
ggtaatcgttttccgtcgagtaatgttaatgttgccgatgtgggaaatttttttgggggg
caaagtcaagtcaaagcatcaatggtcaacaattttgattctcgggttccaggaggatca
tttagcaacaatagtgtccataccagccaaataaaacactctgcaaaagttttggttaat
gacatcgatgatgatgatgaaatacttgagaatattgatgttgaccagatagtggaacag
taccaatcaagttgcacacctcaaccatcgatctccaagcttccacccattactccatct
atagataaagataacattgcaagacaagaggtgactagtttgcctccagatttgtgctca
aactgcattcacgggtttaagataggactttgcccagaagctgcaagtcatttgcaggaa
atgaaggacacgctaattaccatatccaatgaactgcttgacgatgttaatgatctcagt
ccaacgcgaatagagaagcttcgccaagataggttacagcttaataagaagattcagcag
ctcgagagatatctttgtaacaactcattggatgaggaaagacggaagtcacatttttct
gcatccacagcaactcccaggtctttccaatatgaaacacctcaagcagctgcattcagg
actgataccgtgagatttgattcacaggttcaatcacataatgttccaggagattatgaa
agatgtaattcgtcatcagtttcattctcttctgtggatgggtttggtttctcatcttgt
cctgtcgagagggaaccatacatcccaaagtttgttgaagttaactacattgaaggttct
aatgacaacaagtggagtagtaataatttcccatggaccaaaaagctggaggccaataac
aagaaagtgtttggaaatcactcttttcgcctcaaccaaagagaggtcattaatgctacg
atgagcggctatgatgtttttgttctaatgccaactggagggggtaagagcttgacatat
cagctccctgccctaatttgtccaggagtaacattggtaatttctcccctggtgtcactt
attcaagatcaaataatgcatttattgcaggtaatgttattttttttctttttttccagc
nnnnnnnnnnnnnnnnnnnnnnnggaaatctttagagagcttaattctgaatattgtaaa
tacaagctgttatatgtcaccccagagaaagttgcgaaaagtgatgttcttttacggcag
ttggagaatttaaatgctcgtcagttgcttgctaggattgttattgatgaagctcattgt
gtgagtcagtgggggcatgatttcagaccagattatcaggctcttggtatcttgaaacag
aagtttccaaatactccagtgttagctttaacagctactgcaactgctagtgtaaaagag
gatgttgtgcaagctcttggtcttgttaactgcattgttttccggcaaagttttaatcgc
ccaaatttatggtattctgttattccgaagactaagaagtgtctagatgacatcgataag
ttcattaaagaaaatcattatgatgaaagtggaataatttattgtctctcaagaatggac
tgtgaaaaagttgctgagagattgcaggaatgtggacataaagcagcattttaccacggt
agtatggatcctgctcagcgtgcctttgtccagaagcagtggagtaaagatgaaatcaac
attatctgtgctacagtggcatttggaatgggtatcaacaagccagatgtacgctttgta
attcatcactctctcccaaagtctatcgaaggctaccatcaggagtgtggtcgagctggt
agagatggtcagcgttcatcttgtgtgttgtattacagttacagtgactatattcgagtt
aaacatatgattagccaaggagttatagagcaaagcccattggcatctggatacaatcgt
accaatacagctaattctgggagagtactggaaacaaatactgaaaatcttttgcgcatg
gtcagttattgtgaaaacgatgttgattgccgacgaattctacagcttattcatcttgga
gaaaaatttgattgtacaacatgcaaaaagacatgtgataattgtttgaagattaaaagt
ttcgtggagaaggatgtcacagggattgcaaagcaactggttgaactggtgaagttaaca
gggcagcagttttcgtcatctcatattcttgaagtctacaggggctcctttagccaattt
gtcaagaaacacaggcatcagactgtgagcttgcatggagtgggaaaacatctagccaag
ggtgaagcttcccgtgtattacgtcatcttgttaccgaggaccttctttcggaggaagtc
aagaaaagtgatgtttatggatctgtatcatcaatactaaaggttaatgaattgaaagcg
tgtgaacttttctctggcaggaagacaattctaataagattcccttcttccgtaaaagct
tctaaacagaaaaactctgaagtgatttcagctaaaggctcactgacatctgggaagcag
agtcctccaaatattggcactgaacaacctcaatccaaagcaaattcggatctatctacc
aaaatatttacttctttaaaaatgcttcgaactaatctcgttagagaatctgctgatggg
gtcatggcataccacatatttgcgaataccacgctgcagaacatgagcagcagaattcct
agaacgaaggaggaactccttgaaataaatggcattggcaagggtaagttggccaagtat
ggagatcggatacttgaaacaattgaagctgccataaaggaatactacaaaacagataaa
aacagcaccagttgcaatgacagtaatgatatgaagaggaaaagagatggcaacaacaat
gggaatgaaaattttgatgacgacgacttcaccaaaagcacagatcggtcaaggaaaaag
gcaccaaagaggcagaacaaaactattgaggcctatagttatgcggagcctgattacccc
caattgatagatgatgaactagacttatattgctatgactttgaagtgaatgcttcggat
atgaaaactaatcagaatgctggtggaagagtgctgcctcaatggtcaacgcctggaaat
gggcgacagtga
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integrated database retrieval system