Prunus mume (Japanese apricot): 103335955
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Entry
103335955 CDS
T03196
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03030
DNA replication
pmum03410
Base excision repair
pmum03420
Nucleotide excision repair
pmum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103335955
03410 Base excision repair
103335955
03420 Nucleotide excision repair
103335955
03430 Mismatch repair
103335955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmum03032
]
103335955
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103335955
DNA replication proteins [BR:
pmum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
103335955
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
103335955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
Rad17
DNA_pol3_delta
Gp44_lid
AAA_19
BRCT_2
AAA_18
nSTAND3
AAA_16
RuvB_N
AAA_5
AAA_14
Sigma54_activ_2
AAA_assoc_2
AAA_24
Zeta_toxin
AAA_28
NTPase_1
RNA_helicase
RsgA_GTPase
SurA_N
Motif
Other DBs
NCBI-GeneID:
103335955
NCBI-ProteinID:
XP_008237208
LinkDB
All DBs
Position
LG6:complement(14137281..14151754)
Genome browser
AA seq
974 aa
AA seq
DB search
MSQADIRKWFMKSHDKGNGKKPAPTTSQTPSTAKEEPKEPVQGGQENSGRRKTSKYFTTD
KPKAEKETEVPAKRKTHKEPDESVKPSPAKKVHKVVDDDDDFVLPHLKKNSVDATPSKKL
KSASGVGVPQKLTAIDEGGDDDVKDAESLQKPGGRGRGGRGTSAGPAGGRGTSAGPAGGR
GRGAGRGGFMNFGDRKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRH
GGRITGSVSKKTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDMIRASIHAKVSVQEAK
KSVDDAAAASLPKKIPNKVASKKDCAGSSMASSVSHKQLESDASHARRKKQTTEHSASTW
TEKYRPKVPNDIIGNQSLVKQLHDWLAHWHEQFLDTGNKKKGKNPTNSGAKKAVLLSGTP
GIGKTTSAKLVSQMLGFQTIEVNASDSRGKADSKIEKGIGGSNANSIKELVSNKALSMDG
LKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPVICICNDRYSQKLKSLVNYCLLL
SFRKPTKQQMAKRLMQIANAEGLKVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKY
DDVRQRLLSSAKDEDISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYINY
RPSSAVKDDSGIKRMNLIARAAESIGNGDIFNVQIRKYRQWQLSQSACLSSSIFPAALLR
GQRETLEQGERNFNRFGGWLGKNSTLGKNLRLLEDLHVHLLASRESSSGRETLRVEYLSL
LLKRLTVPLRELPKDEAVHKVVDFMNAYSISQDDFDTIVELSKFQGHPNPLDGIQPAVKA
ALTKAYKEGSKTRMVRAADFITLPGMKKAPKKRIAAILEPSVDVIGENNDDTLVESEEEN
SSDTEDLEGSAAGEKLQQELQSLNTKGVHVQFDLKGATNSSAKKTPTGRGRGGSSAAAEK
KGGRGSGAGGKRKR
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggcagatattaggaagtggtttatgaagtcgcacgacaagggcaatggcaag
aaacctgcgccaactacttctcagactccttctacagctaaggaagagcctaaagaacca
gtgcagggaggtcaagagaattcaggcaggaggaaaactagcaagtattttaccacagat
aagccaaaagctgaaaaagaaactgaagttccagccaaaagaaaaactcacaaggagcct
gatgaatccgtgaaaccctcacctgcaaaaaaagttcacaaagttgtcgatgatgacgat
gattttgtcttacctcatttgaagaagaactcagttgatgcgactcctagtaagaaattg
aagagtgcatctggcgtgggagtcccacagaaacttacggctattgatgaaggtggtgat
gatgatgtcaaggatgctgaatctcttcaaaagcctggtggtaggggtcgtggtggaaga
ggtacttcggcaggaccagctggtggaagaggtacttcggcaggaccagctggtggaaga
ggcaggggcgctggacgaggtggatttatgaatttcggagatagaaaagatcctccacac
aaaggagaaaaggaagttcctgaaggtgctccagattgtttagctggtttaacttttgta
attagtggtacacttgacagtttggaaagagaggaagcagaggatttgataaaacgtcat
ggcggtcgtattactggatctgtcagcaagaaaacgaactatcttttatgtgatgaagat
attgagggaaggaaatcctctaaagccaaagaacttggtactgcttttctcactgaggat
ggactgtttgatatgattcgggcatctatccatgcaaaagtatctgtgcaagaggcaaag
aaatctgtggatgatgcggcagcagcatctttgcccaagaaaattcctaataaagtagca
tcaaagaaagattgtgctggaagctccatggcatcaagtgtatcccacaaacaattggag
tcagatgcttcccatgctaggcgtaagaagcaaactactgagcattctgcctccacttgg
acagaaaaatataggccaaaggttccaaatgacattatcgggaatcagtcactggtaaag
cagcttcatgattggttggcacattggcatgagcaatttcttgatactggaaataaaaaa
aaaggcaaaaacccaaccaattctggtgccaaaaaggctgtactattaagtggaacgcct
ggtatagggaaaacgacgtccgctaagttagtcagtcagatgcttggtttccagacaatt
gaggtaaatgctagtgacagtcgtgggaaagctgattccaagattgaaaagggaattggt
ggaagcaatgcaaattctattaaagagcttgtcagcaacaaggccctgagcatggatgga
ttgaagcatcccaaaactgtgctaattatggatgaggttgatgggatgtctgctggagat
cggggaggagttgctgatcttattgctagcataaagatttctaaaattcctgttatctgc
atttgtaatgatcgttacagtcagaaactgaaaagtcttgtgaactactgtttacttctc
agctttcggaaacctactaaacaacagatggcaaagaggttgatgcaaattgcaaatgct
gaaggacttaaagttaatgagattgctcttgaggaactcgcagaaaaagttaatggagac
atgcgaatggcagttaaccagttgcagtatatgagcctatcaatgtctgtcattaaatat
gatgatgtaaggcagcgcttattaagcagtgcaaaggatgaagatatttcaccattcaca
gctgttgacaagctgtttggttttaatgcaggaaagttgcggatggatgagcgtgttgac
ctgagcatgagtgatcctgatctagtccctcttcttatccaggaaaattatattaactat
aggccaagttcggctgtcaaggatgatagtgggataaaacgtatgaacttaattgcccgt
gctgcagagtctattggcaatggggatattttcaatgtacagattagaaaatatcggcaa
tggcagctttcccaaagtgcttgtctttcatcctctatttttcctgctgcattattgcgt
gggcaaagagagacacttgagcagggagaaaggaattttaatagatttggagggtggctg
ggaaagaactcaacacttggaaaaaatttgaggctcttggaagatttgcatgtccatctt
cttgcttctcgtgaatctagttcggggagggaaaccctgcgagttgaatacctttctctt
cttctgaaacgattgaccgtgcccctccgtgaacttcctaaggatgaagctgtacacaaa
gttgtggatttcatgaatgcttactccattagtcaggatgactttgatactattgtggag
ttatccaaatttcaggggcacccaaatcctctagatggcattcaaccagctgtaaaggca
gcgctgacaaaagcttacaaagaaggcagcaaaacaaggatggtacgagctgcagatttt
atcactttacctggaatgaagaaggctcctaagaagcggattgctgctattttagaacca
tctgttgatgtaattggagagaacaatgatgatactttggttgagagtgaagaagaaaat
tcgtcagatacagaggacttggaaggttctgcggctggtgagaagctgcaacaggaactt
caaagtttgaatacaaaaggagtgcatgtacaattcgatttgaagggtgcaacaaattca
agtgcaaagaagacaccaacaggcaggggtagaggtggttcatctgccgcagctgagaaa
aaaggaggccgaggttcaggggctggtggaaagagaaagagatga
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