KEGG   Protobothrops mucrosquamatus (Taiwan habu): 107284305Help
Entry
107284305         CDS       T05763                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pmur  Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmur00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107284305 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmur03400]
    107284305 (LIG4)
Enzymes [BR:pmur01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107284305 (LIG4)
DNA repair and recombination proteins [BR:pmur03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107284305 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C DNA_ligase_IV RNA_ligase LIG3_BRCT mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 107284305
NCBI-ProteinID: XP_015667828
LinkDB All DBs
Position
Unknown
AA seq 916 aa AA seqDB search
MRREKTSKMASVPISHSSSKLTVASQVPFADLCSTLEQIQKCKSRSDKTRYFKDFLDSWR
KFHDALHKNEKDVIDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAL
KLLNFRTPIGSQGNVGDFAMIAYFVLKSRCINQGQLTIQQVNDLLDSVSNNNAAKRKGLV
KKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTLFSIFHSDAAELHSVTTDLEKVCRQ
LHNPLVSLIDASITLFSAFKPMLASIASVHQIEKQMNNQTFYIETKLDGERMQMHKDGDV
YKYFSRNGYDYTQQFGASPLEGSLTPFIHQAFRNTQNCILDGEMMAYNPTTQTFMQKGSK
FDIKRMVDDSELQTCFCVFDVLMVNDQKLGHEMLNKRCNRLNTVFIPIPGRIQIVSRIQA
NTQKEVVDALNEAIDNREEGIVIKDPISIYKPDKRGEGWLKIKPEYVSGLMDELDLLIIG
GYWGKGLRGGMISHFLCAVAEAPLPGERPSKFHSICRVGSGCTMRELYDLGLKLATYWKK
YDRKVPPCNILCGAEKPQVFIDPCNSVIVQIKAAEIVSSDMYKTECTLRFPRIERIRDDK
EWYECMTVDFLEQLRSKAAGKLATKHLDIVEDEPQEKKRKTVAKIKKAIGLMDHFKAPDL
SKINKVSNVFENVEFCIMTGTQHYSKYALESKVAEYGGSIVQNPGPDTYCVVAGTENVRV
KNIISSNNYDVVRAEWLLQCFQAGKFVPWQPTFMIHMSPETKQHFACEYDTYGDSFTADT
NPLELKAVFSRINTSEEIFQDVIANIEARYSWESSLSMFRQQTIYLSLSDEISYLRDRIN
QTRCLTVELILRFHGAKVVSQLEEGVSHVISGDHSDLKKIKTIRRTFKKKFKIVSEQWIK
DSVKAGELQNENLYMM
NT seq 2751 nt NT seq  +upstreamnt  +downstreamnt
atgaggagagaaaaaacatctaagatggcttcagtccccatttcacattcatcttccaag
ctaactgtagcatcacaagtcccatttgcagatctctgttcaacattagaacaaatacag
aagtgcaaatcccgatcagataaaacaagatatttcaaggattttctagattcctggagg
aaatttcatgatgctcttcataaaaatgagaaggatgtaatagattctttttatcctgca
atgaggcttattcttccacagttggaaagagagaggatggcttatggaattaaagaaaca
atgcttgctaagctatatattgaattgctaaatttacccaaagatggaaaagacgcttta
aaacttttaaattttcgaacacccattggctcacaaggaaatgttggagactttgctatg
attgcctactttgttttgaaatcaagatgcatcaaccaaggtcaactgaccatacaacaa
gtgaatgatcttctagattcagtttctaataataatgctgccaaaaggaagggtctagtt
aagaagagccttcttcagttaataactcagagctcagcactagaacagaagtggttgatt
aggatgatcataaaggatttgaaacttggtgtcagccagcaaaccttattttctattttc
cattctgatgctgcagaattgcacagtgtcacaacagatttggaaaaggtttgtaggcag
ctgcataatcctttagtatcacttattgatgcttctattacattattttctgcctttaaa
ccaatgcttgcttctattgccagtgtgcaccaaattgagaaacaaatgaataatcagact
ttttatatagaaaccaaattagatggtgaacgaatgcagatgcacaaagatggagatgtt
tacaaatacttttccagaaacgggtatgattatactcagcagtttggtgcttctcccctt
gaaggttcattgactcctttcattcatcaggcctttagaaatactcaaaactgcattctg
gatggtgaaatgatggcctataatcctaccacccagacttttatgcagaaaggaagcaag
tttgacatcaaaaggatggtggatgattctgaattacaaacatgcttctgtgtatttgat
gttcttatggtcaatgatcaaaagttgggtcatgaaatgctgaacaaaaggtgcaatagg
ttaaatacagtttttataccaatacctggtcgaatacagattgtttctagaattcaagca
aacacacagaaagaagtagtagatgccctgaatgaagccattgataacagagaagaagga
attgtaataaaggaccccatatcaatttacaagccagataagcgtggggaaggatggctg
aagatcaagccagaatatgtcagtgggttgatggacgaactggatcttttaattattgga
ggctactggggcaaaggtcttcgtggtggcatgatatctcattttttatgtgcagttgct
gaggctcctttgcccggtgaaagaccatctaaattccattccatttgccgtgttggttcc
ggttgcaccatgagagaattgtatgatcttggcttgaaattagccacatattggaaaaaa
tacgataggaaggttcccccttgtaatatcttatgtggtgctgagaagcctcaagtcttt
attgatccttgtaattcagtgattgtccagattaaagctgctgagattgtgagtagtgat
atgtataaaacagaatgcacattacgctttccacgcattgaaagaataagggacgataaa
gaatggtatgaatgtatgactgttgactttctagaacaactcagaagtaaagctgctggg
aagcttgcaacaaaacaccttgatatagttgaggatgaaccacaagaaaagaagcgtaaa
actgttgcaaaaattaaaaaagcaatcggtttaatggatcattttaaagcacctgacctt
tctaaaataaacaaagtttctaatgtttttgaaaatgttgagttttgtattatgactggg
acacaacattattcaaagtatgctctggaaagcaaagtagcagaatatggtggcagcata
gttcaaaatcctgggcctgatacttattgtgttgtggcagggactgagaatgttagagtg
aaaaatattatttcttccaataattatgatgttgtgagagcagaatggcttttacagtgt
ttccaagctggaaaatttgtaccatggcagcctacttttatgattcacatgtctcctgaa
acaaagcaacattttgcttgtgaatatgatacttatggtgatagtttcacagctgatact
aatccattagagttgaaggcagtgttctcaagaattaatacctctgaagagatttttcag
gatgtgattgctaacatagaagcccgttattcttgggaaagttccttaagtatgttcagg
caacaaaccatttacctgagcctttctgatgaaataagctatttaagagacaggataaat
caaaccagatgtttaaccgtagagttgatacttcgctttcatggagcaaaagtagtgtca
cagcttgaggaaggtgtatcccatgtaatcagcggagatcattctgatttgaagaaaata
aaaaccattagaaggacatttaagaaaaagtttaaaattgtgtcggagcaatggataaaa
gattctgtaaaagctggagaattacaaaatgaaaacttgtacatgatgtaa

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