KEGG   Protobothrops mucrosquamatus (Taiwan habu): 107286558Help
Entry
107286558         CDS       T05763                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
pmur  Protobothrops mucrosquamatus (Taiwan habu)
Brite
KEGG Orthology (KO) [BR:pmur00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pmur01009]
    107286558 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmur03019]
    107286558 (HDAC6)
   04131 Membrane trafficking [BR:pmur04131]
    107286558 (HDAC6)
   03036 Chromosome and associated proteins [BR:pmur03036]
    107286558 (HDAC6)
Enzymes [BR:pmur01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107286558 (HDAC6)
Protein phosphatases and associated proteins [BR:pmur01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107286558 (HDAC6)
Messenger RNA biogenesis [BR:pmur03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     107286558 (HDAC6)
Membrane trafficking [BR:pmur04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    107286558 (HDAC6)
Chromosome and associated proteins [BR:pmur03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     107286558 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 107286558
NCBI-ProteinID: XP_015670435
LinkDB All DBs
Position
Unknown
AA seq 1095 aa AA seqDB search
MASDLGNGSVLDPKSVPALDIEAPLKKANRKGGLPEAKRKGRAKKMNKDAEDLLLGLQRL
DLTSECAAPLGTGLIWDNRMTEFCCPWDESFPECPERLVTIRDKLLQYELLERCVPVLGR
EISEEEILLAHSQEYLTLMKSTETMSETELRSLADTFDSVYLHPNFYRCACLAAGSVLQL
VEKVWSGELRNGLAVVRPPGHHAHRSKMNGYCMFNNIGIAAQYARQKLGVERVLIVDWDV
HHGQGLQYLFEENPSVLYFSIHRYEGGNFWPHLPESDSHAVGRGRGEGYNINVPWNQTGM
RDADYLSAFLHVLLPVALEFQPQMVLVAAGFDAVIGDPKGEMAATPACFAQLTHLLKSLA
GGKLILSLEGGYNLQSLAEGTCTVLKTLLGDPCPLMESPFLPCSSALSSVSQTIAVHSKY
WKNLRRISADVPQEDGKLSVAWPSASPVSVADTLSRSAAELIQPQPPSCTGLVYDEKMME
HYNMWDSHHPELPQRVSRIFQRHRELHLTERCCRIPARLASEEELQMCHSLAYVETLKST
ATMKPRDLHRQGDQYNSVYICASSYVCARLAAGSAFSAVEAVLSGKTQNAVAIVRPPGHH
AESDTACGFCFFNSVALAARHAQRLAQRPLRVMILDWDVHHGNGTQHIFEKDPSVLYISL
HRYDNGTFFPTSEDADYDRVGVGPGEGFTLNVPWNCSRMGDSEYLAAFHQIVMPVGYEFN
PELVLVSAGFDAARGDPLGRCLVTPECYAHMTHLLLGLAGGKVAVVLEGGYNLESISESM
TMCTRSLLGDPPPPLGRLKPPHLSALQSLARVAAVHRKYWASLRLEVPATLWEKPRTRAG
KETPIPHEIPDPAPQELLQSPVAQSVEAISDAVAGLGSLQLEDNLMEEGETASSSLSPDS
SPVGEETQPKVGGSPKEAEPAEEAPREGVSAEGFSAEVMAPDKEASLQHHRRINIEVVLL
DEAAGGCSSFDKQLGEGGADSGLFYAVTPLPWCPHLSSVLPVPPVGLNVLEPCAECGSEM
ENWVCLVCYKVCCGRYINQHMLDHNKESGHPLVLSFADLSAWCYDCQAYIHHPVLLEAKC
QAHKLKFGVDMHLSS
NT seq 3288 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgatttgggaaatggctcagtattggaccccaaatctgtgcctgctttggac
attgaagctccattgaaaaaggctaacaggaagggagggcttccagaggccaagcggaaa
ggacgggcaaaaaagatgaacaaagatgctgaagatctgcttttgggcctgcagcgactg
gatcttacttcagaatgtgctgctcccttaggaactggactgatttgggataatcgaatg
accgaattttgctgcccgtgggatgaaagtttcccagagtgcccagagcggttggtgact
attcgggacaaactgcttcagtatgaactgttggaacgttgtgtcccagttttgggccga
gaaatttctgaggaagagatcctcttggctcacagtcaagaatacttgacgctcatgaaa
tcaactgaaacaatgagtgagaccgagttaaggtctctggcagatacctttgattctgtt
tacctgcatccaaatttctaccgctgtgcctgccttgctgctggttctgtcttgcaactt
gtggagaaagtatggtctggagaactccgtaatgggctagctgtggtcaggcctcctgga
caccatgctcaccgcagcaagatgaatggctactgcatgttcaacaacataggcattgca
gcgcaatatgcccgacagaaactgggggtggagcgggtgcttatcgttgactgggatgtg
caccatgggcaaggcctccaatacctctttgaggagaatcccagcgtcctttatttctcc
atccatcgctacgaaggagggaatttctggccccaccttccagaatctgacagtcacgca
gtgggcagaggtcggggagagggctacaacatcaacgtgccctggaaccagaccggaatg
agggatgctgactacctctctgcctttttacatgttctactaccagtggccttggagttc
caaccccagatggtcctggttgctgcgggttttgatgccgtaattggtgaccctaagggg
gagatggctgccaccccagcatgctttgctcaactgacacacctgttaaagtcactggct
ggaggcaagctgatcttatctctggagggtgggtataatctccagtctttggcagaggga
acctgcacggtccttaagactcttctaggagacccctgcccgctgatggaatcacctttc
ctcccatgtagcagtgctctcagctcagtgtctcagaccattgcagttcatagcaagtat
tggaagaacctacggaggatcagtgccgatgtgcctcaggaagatggcaagctcagtgta
gcttggccgtcagccagccctgtctctgtagctgataccctctccaggtcagcagctgaa
ctgatacagcctcagccgccttcttgcacggggctagtctatgatgagaaaatgatggag
cactacaatatgtgggacagccatcatccagagctgcctcagagagtatccaggatcttc
cagcgccacagggagctgcatctgacagaaaggtgctgccggatcccagcccgtcttgcc
tctgaagaagaactacaaatgtgccacagcctggcttatgtggagacattgaagtccaca
gccaccatgaagccccgtgacctgcatcgccagggggaccagtacaattctgtctacatc
tgtgccagctcctatgtgtgtgcccggttggcagctggatccgcattcagcgcagtagag
gctgtgctctctgggaagactcaaaatgctgtggccattgtccgcccgccaggacaccat
gctgaatcagatactgcctgtggcttctgcttcttcaattcagtggctttagcagcacgc
catgcccagcgcctggcccagaggccgttgagggttatgatactagactgggatgttcac
catggcaatggaacacagcacatatttgaaaaggatcccagtgttttgtacatctccctc
catcggtatgacaatggcactttcttccccacttctgaggatgcagattatgaccgagtg
ggtgtggggcctggtgaaggcttcacccttaacgtgccttggaactgttcccggatggga
gactctgagtatctggcagccttccatcagatcgtcatgcctgttggctatgagttcaac
ccggagctggtcctggtgtcggctggttttgatgctgctcgaggagacccattggggagg
tgtctcgtgaccccggaatgctacgcccacatgacccacctcctcctgggtttggcagga
gggaaagtagccgttgtcctagagggtggctacaacctagaatctatctcagagtccatg
actatgtgcacgcgcagcctcctgggggatcctccacccccactcggacgcctaaagccc
ccccatctgagtgccctgcagtcattggcccgtgtcgctgctgtgcaccgtaaatattgg
gcaagcctccgactggaagtgcctgctaccctgtgggaaaagcccaggactcgagctggg
aaggaaactcccattccacatgaaattcctgatccggcccctcaggagttgctccaaagc
cctgtagctcagtctgtggaagctataagtgatgccgtggcgggcctgggctccctccag
ctagaagacaatctcatggaagagggcgagacggcttcgagttctctctctcctgattct
agcccagtgggtgaagaaactcaacccaaagttggtggatcccctaaggaagcggagcca
gcagaggaggcaccaagggaaggcgtatcggcagagggcttctctgctgaagtaatggct
cctgacaaagaagccagcctgcagcatcaccgcagaatcaacattgaggttgtcctgttg
gatgaagcagcaggaggctgttcttcgtttgacaagcagcttggggaaggtggggccgac
agtgggctcttttatgccgtgactcccttaccctggtgcccccacctcagctcagtgctg
cctgtgcctcctgtgggcttgaatgtgttggagccttgtgcagaatgtggtagtgagatg
gagaactgggtttgtctggtgtgctataaggtctgttgtggacgctacattaatcaacat
atgctggatcacaataaggaatctgggcatccactggtacttagctttgcagatctctct
gcttggtgctatgactgccaagcctatatccatcacccagtccttcttgaagccaagtgc
caggctcacaagctgaagtttggagtggacatgcacctatcttcctaa

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