KEGG   Protobothrops mucrosquamatus (Taiwan habu): 107288940Help
Entry
107288940         CDS       T05763                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
pmur  Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pmur00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    107288940 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmur03400]
    107288940 (LIG3)
Enzymes [BR:pmur01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107288940 (LIG3)
DNA repair and recombination proteins [BR:pmur03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     107288940 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 107288940
NCBI-ProteinID: XP_029140289
LinkDB All DBs
Position
Unknown
AA seq 984 aa AA seqDB search
MLLSLKAFLKAARSLSRSEKLALLLKKAHCHAHTGVFRFLNKGALPWTGPWYHQSGISSF
PFPAALHVCHLTSLCPASEMAEQRYCVDYAKRGTAGCKKCKEKILKGMLRIGKVVPNPFT
ESGGDMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQEAEKEMINQHISDLSSKT
ANTPKKKAIIQTKISPGGQITSPKKMPLVSSNPSPRKFSSFTAKSGTYEETSSSGSSHKP
SLSTEKCDPKHKDCLLREFRKLCVMVADESSYNVKTQIIQDFLQKGTSGDGFRGDLYLTI
KLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQEDMVRDLEQGDVSETVRIFFEQSRSCPPA
AKSLLTIQEVDEFLTQLSKLSKEEEQQNLLQEIASRCTANDLKCIIRLIKHDLKMNAGAK
HVLDALDPNAYEAFKASRNLHDVVERVLKNQQESQPGMKKILSVQAALMTPVQPMLAEAC
KSIEYAMKKCPNGMYAEIKYDGERVQVHKKGDHFCYFSRSLKPVLPHKVAHFKDFIPKAF
PGGHSMILDAEVLLIDTKIGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRP
LRERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDVKSIYEPG
KRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQKWCTVTKC
AGGHDDATLARLQKELDMVKISKDPSKIPDWLKINKNYYPDFIVPDPKAAPVWEITGAEF
SKAEAHTADGISIRFPRCTRIRDDKDWTTSTTLPQLRELYQVSKEKSDFLVVAAEEETST
AGSSGETEGQPKLSSPQKAAKQHSRKSPAKAKKPEASKLVDKSPLKKTEGKRAEKRKAPE
MEGDKRKLLLDIFTGVKLYLPPSVEGFRKLKRYFVAYNGDLVQEYDATSATHVMERMEDN
PAAKHVSPEWIWECIRKRRLVTPC
NT seq 2955 nt NT seq  +upstreamnt  +downstreamnt
atgctgctttctctcaaagcttttctgaaagcagccaggagccttagcagaagtgaaaaa
ttggccttgctgctgaagaaggcacactgtcacgctcacactggtgtattcagattcctc
aataagggtgccttgccttggactggaccctggtaccaccaatctggcatctccagcttt
ccctttccagcagctttgcatgtttgccatctgacatccttgtgccctgcctctgagatg
gcagaacagcggtactgtgtggactatgccaagcgaggcactgctggctgcaaaaagtgc
aaagagaagatcctcaaggggatgctgcgcattggaaaagtggtacccaatcccttcact
gaatctggcggggacatgaaggagtggtatcatgtcaagtgcatatttgagaaactggag
agggctcgagccacaacaaagaagattgaagatatcacagacctggaaggctgggaagaa
ctgcaggaggctgaaaaggagatgatcaatcagcacatctcagacctttcttccaaaact
gcaaacactccaaagaaaaaagctataatccagacaaagatttctcctggtggacaaata
acatcccccaagaaaatgcctctggtttcttcaaatccttcaccaaggaaattttcaagt
tttacagcaaagtcaggcacttatgaagaaacatccagctctggctcttcccacaagccc
agcttgtccaccgagaagtgtgatccaaaacacaaagactgtttgctgcgggaattcagg
aagctgtgtgtaatggtggctgacgaatccagttacaatgtcaaaactcaaataattcag
gacttcttacagaagggaaccagtggagatggctttcgaggtgatctctacctaaccatc
aagttactcttgcctggagtcattaaaagtgtttacaatttgaatgacaagcagattgtc
aagctcttcagtaggatattcaactgcagccaggaagacatggtccgagaccttgagcag
ggtgatgtttcagaaaccgtgcggatcttttttgagcaaagcaggtcttgccctcctgct
gccaagagccttttgacaatccaggaagtagatgagttcctgacacagctatcgaaactt
tccaaagaagaggagcagcagaacctattgcaagaaattgcatcgaggtgcaccgctaat
gacctgaagtgcatcattcgactgattaaacacgacttgaaaatgaatgctggcgcaaaa
cacgtacttgatgcattggatcccaatgcttatgaggctttcaaagcatcccgaaacctc
catgatgttgtggagagagtgctgaagaaccagcaagaatctcagccaggcatgaagaaa
attcttagtgtccaggcagccctgatgaccccagttcagcccatgctggctgaagcttgc
aaatcgattgagtatgccatgaaaaagtgtcccaatggcatgtatgcagagattaagtat
gatggagagcgcgtccaagtgcacaaaaagggagatcatttctgctattttagccgcagt
ctgaaacctgttctccctcataaggtggctcattttaaggacttcatcccgaaggccttt
ccaggagggcacagtatgatcttggatgctgaagttcttctgattgacaccaagataggg
aagcctctgccttttgggacgctgggagtgcataagaaagctgctttccaggatgctaat
gtttgcctttttgtctttgactgcatctacttcaatgacgtcagtctgatggacaggcct
ctgcgtgagcgtcgcaaatttctccatgataacatggtggaaattcccaaccgaattctc
ttttcagagatgaagcatgtcacaaaagcttcggacctcgccgacatgatcaaccgagtc
atccgggaagggctggagggattagtgctgaaagatgtgaagagcatttatgaaccagga
aaacgccactggctcaaagtgaagaaggactatctgaatgagggagcaatggcagacaca
gcagacctggtggttttgggtgccttctatggccaggggagcaaaggtgggatgatgtcc
atcttcctcatgggttgttacgatcctgacagccagaagtggtgcacagtgaccaaatgt
gctggcggacatgatgatgccacacttgctcggctgcagaaagaactggacatggtgaaa
atcagcaaggatcccagtaaaattccagattggttaaagattaataagaattattatccg
gatttcattgttccagacccaaaggcagcaccagtctgggaaatcacaggtgctgaattc
tctaaagcagaggcccacactgctgatggtatctcaatccgcttcccccggtgtactcgt
atccgggatgacaaagattggactacgtccactaccctcccacaactcagggagctgtac
caggtatctaaagaaaaatcggacttcttggtagttgctgcagaagaggagacctccaca
gcgggcagcagcggagagactgaaggccagcccaagttatcttctcctcagaaggcagca
aaacagcattccaggaagtcccctgcgaaagccaagaagcctgaagccagcaaactagta
gataaatctccactgaagaaaactgagggaaagcgagcagaaaaaagaaaagcacctgag
atggagggggacaaaagaaagctgctactggacatatttactggggttaagctttatctt
cctccttccgtggagggtttcaggaaactcaagcgttatttcgtagcctataatggagac
ctggttcaagagtatgatgccacttcagcaacacatgtgatggagaggatggaagacaac
ccagctgctaagcatgtgtcccctgagtggatttgggaatgcattcgaaagagaagactg
gtgactccatgctag

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