Paenibacillus mucilaginosus K02: B2K_01045
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Entry
B2K_01045 CDS
T02041
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmw
Paenibacillus mucilaginosus K02
Pathway
pmw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2K_01045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmw03019
]
B2K_01045
03016 Transfer RNA biogenesis [BR:
pmw03016
]
B2K_01045
Enzymes [BR:
pmw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B2K_01045
Messenger RNA biogenesis [BR:
pmw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B2K_01045
Transfer RNA biogenesis [BR:
pmw03016
]
Prokaryotic type
tRNA degradation factors
B2K_01045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
PqqD
RNase_II_C_S1
HemN_C
DUF3438
Motif
Other DBs
NCBI-ProteinID:
AFH59328
UniProt:
I0BAD1
LinkDB
All DBs
Position
234016..236559
Genome browser
AA seq
847 aa
AA seq
DB search
MITKDILLDFMQEEAYKPLTYQELEQHFQLDSAQAFKDFLKLLNELENEGLIVRTRNDRY
GVPERMNLLRGRLQAHAKGFGFLIPDDKEHPDVYIHANDMSTAMNGDIILVRITSRSPSG
GRMEGEVVRVVSRANTRIVGLFQAHEEYAFVIPDDKRVVRDIFIPKDSFGGAMDGHKVVV
NIVSYPEGRAAAQGEVIEILGHKNDPGVDILSIIRKHGLPEAFPDEVMEEASEAPDVITE
EEIVSQGRRDLRNKRIVTIDGEDAKDLDDAVNVEVLENGNYVLGVHIADVSYYVRENSAL
DQEAYSRGCSVYLVDRVIPMLPHRLSNGICSLNPRVDRLTMSCEMEFDAQANVVRHDVFT
SVIRTSERMTYKNVRNLLKGEAEPEVQEKYAYLMDDFRRMEDLAMRLRNKRMRRGAIDFD
FQESKILVDESGKPTDIVKRERSIAEMIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPD
AEKLQHFLEFITNFGYVVRGKGNTIHPKALQSLLEEIKGTKEETVISTVMLRSMKQAKYD
ANSMGHYGLAAEFYSHFTSPIRRYPDLVIHRVMREVLEGGGTGLTDKRHEYLTSRMDDIA
KQSSERERVAVDAERETEALKKAEFMLDKVGEEFTGIISSVTSFGMFIELENTVEGLIRL
SDLTDDYYHFHDAQHALIGERTSKIFRLGDEVKVRVSRVNMDEKTIDFEMVDMKPRSQKM
SLVDALNGVRRGAGKRGGAGGARGARGGGEGRPAAAGSGGEGRPAAAGSGGGGRGGRGKR
GAAAGPGARGSLGGGGRGKAGRGASAVGAGKGPGAAKARALDAVGRSGESGGGTGFVRKK
RKKTVKR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgatcactaaagacatattacttgattttatgcaggaagaggcttataagccgctgact
taccaggagcttgagcagcattttcaactcgacagtgcccaggcgttcaaggatttcctg
aagctcttgaatgagctggagaacgaagggctgatcgtgcggacacgcaatgaccggtac
ggcgtgccggagcggatgaacctcctccggggccgtctgcaggctcatgccaaagggttc
ggcttcctgattccggacgataaggagcatccggacgtctacattcatgcgaacgatatg
agtacagccatgaacggggacatcatactggtccgcatcacttcccgcagtccttcaggg
ggacggatggaaggggaagtcgtccgggtcgtgtcacgagccaacacccggattgtcggt
ctgttccaggcccatgaggagtatgcgttcgtcataccggacgacaagcgggtggtacgc
gatatcttcatcccgaaggattccttcggcggggctatggacgggcacaaggtggtcgtc
aatatcgtctcctatccggaaggacgggcggcggcacagggagaagtcatcgagattctt
gggcacaaaaatgacccgggcgtcgacattctctcgattatccgcaagcatggtcttccg
gaggccttcccggatgaagtgatggaggaggcttcggaagctccggacgtcattacggaa
gaggagattgtgtcccaaggccgccgcgacctccgcaacaagcgaatcgttaccatcgac
ggcgaagacgccaaggacttggacgatgccgtcaatgtggaagtgctcgagaacggcaac
tacgtcctgggcgttcacattgcggacgtcagctattatgttcgcgagaactcggcgctg
gaccaggaggcgtatagccgcggctgctccgtctacttggtggaccgggtcattcccatg
ctgccccaccgtctctcgaacgggatctgctccctgaatccgagagtggaccggctgacg
atgtcctgcgaaatggagttcgatgcacaggcgaacgtggttcggcacgatgtatttacg
agtgtgattcggaccagcgagcggatgacgtacaagaatgtgcgcaatctgctcaaaggg
gaagccgagcctgaagtgcaggaaaagtacgcgtacctcatggacgatttccgccggatg
gaagacctggcgatgcggctgcggaacaagcggatgcgccgcggtgcgatcgattttgac
ttccaggaatccaaaatcctcgtagatgagagcggcaaaccgacggatatcgtgaagcgg
gagcgttccatcgccgagatgatcatcgaagaattcatgcttgcggcgaacgaaacggtg
gcggagcatttccactggctcaaggttccgttcctgtaccggatccatgaagatccggac
gcggagaagctgcagcacttcctcgagttcatcacgaacttcggctatgtggtgcgcggt
aagggcaatacgattcatccgaaggcactgcagagtctcctggaggagatcaaaggaacg
aaggaagagacagtcatctcgacggtcatgctgcgttccatgaaacaggcgaagtacgat
gcgaactcgatgggtcactatggtctggcggccgagttctattcccacttcacatcaccg
atccgccggtatccggatttggtcatccaccgggtcatgcgagaggtactggagggcggc
ggaaccggtcttaccgacaaacggcatgagtatctgacttcaagaatggacgatatcgcc
aagcagtcgtctgaacgcgaacgggtagcggtagatgccgaacgggaaaccgaggctctc
aagaaagccgagttcatgctcgacaaggtcggcgaagagttcaccggcattatctccagc
gtcacctccttcgggatgttcatcgagctggagaatacggtggaaggtctcatccgtctc
tcggatctcacagacgactactaccacttccatgatgcgcagcacgcgctgatcggggaa
cgcacatcgaagattttccgtctcggcgacgaggtgaaggtccgcgtctcgcgggtgaac
atggacgagaagaccatcgacttcgagatggttgacatgaagccgcgctcgcagaagatg
agcctcgtcgacgcgctgaacggtgtgcgccgcggagcaggcaagcgcggcggcgccgga
ggtgcccgcggagcgcgcggtggcggcgaaggacggccggcggcagccggcagcggtggc
gaaggacggccggcggcagccggcagcggtggcggaggacgcgggggccggggtaagcgc
ggagcggcagccgggcccggtgcacgcggcagcctgggcggcggcggtcgcggcaaagcc
ggacgcggtgccagcgccgtgggcgccggcaagggcccgggggccgcgaaggcgcgggcg
ctggacgcggtcggacgcagcggcgagagcggcggcggtacgggcttcgtgcgcaaaaag
cgcaagaagaccgtgaagcggtag
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