KEGG   Pseudomonas mendocina ymp: Pmen_3217
Entry
Pmen_3217         CDS       T00510                                 
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmy  Pseudomonas mendocina ymp
Pathway
pmy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pmy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Pmen_3217
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmy03400]
    Pmen_3217
Enzymes [BR:pmy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pmen_3217
DNA repair and recombination proteins [BR:pmy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pmen_3217
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: ABP85970
UniProt: A4XXA4
LinkDB
Position
3556803..3559316
AA seq 837 aa
MAKAQSEYSRKRNFERTSEPAERTGKRRSKAGALRFVVQKHDARRLHYDFRLELDGTLKS
WAVPKGPSLDPRDKRLAVHVEDHPLEYASFEGSIAEGNYGAGDVIVWDQGIWQPQGDPAA
AYAAGKLKFSLVGEKLSGDWTLVRTRLRGSGDKEQWLLIKERDDIARPSDEYDIVEAQPQ
SVISGALVGGPSAKAKGKTPSKAKAPKPAAAFPESLAPQLATLSDRPPEGDWLYEVKFDG
YRILARIRDGEVRLFTRNGHDWTQRLPLQAKALAKLGLHDSWLDGEVVALNEQGLPDFQQ
LQNAFDIGRSHDLVYYLFDAPFINGEDLRQTPLEQRRAQLKLLLGNTRNGPLRFSAAFTA
HHRDIVESACAMSLEGVIGKRAGSLYVSRRSADWIKLKCRLRQEFVIVGHTQPQGSRSGF
GALLLAVNEDDGLRYAGRVGTGFGEAALKALHQRLQELAREDSPLAHKLTAAQARGVSWV
EPQLVGEVEFAEWTREGIVRQASFVALRSDKPAAQIVRERPGAPQSSPPRKPAAKAGGKP
VVAGVAISNAQRVIDPDSGTSKLQLAQFYESIADWLLPYLNNRPVSLLRAPEGIGGEQFF
QKHAERLAIPNIKHLDPELDPGHARLMEIDSVAALVGAAQMGCIELHTWGATSDRIETPD
LFVLDLDPDPALPWRSMLEATRLTLTVLDELGLQAFLKTSGGKGIHIIVPLARRAGWDEV
KAFAKAIAQFMTSQLPERFTATSGPKNRVGKIFIDYLRNSRGASTVAAYSVRARPGLPVS
VPISRDELDGLRSAQQWTVGNLQQRLDGLKQDPWQGYSNRQRLTRAMWDRLGAKPPS
NT seq 2514 nt   +upstreamnt  +downstreamnt
atggccaaggcgcagagcgaatacagccgcaaacgcaatttcgaacgcaccagcgagccg
gccgagcgcaccggcaagcggcgcagcaaggccggcgcgctgcgcttcgtggtgcagaag
cacgacgccaggcgcctgcattacgacttccgcctggagctggatggcaccctgaagagc
tgggcggtgcccaagggtccgagcctggacccgcgcgacaagcgcctggccgtgcacgtc
gaggatcacccgctggagtacgccagcttcgagggcagcattgccgagggcaactacggc
gccggcgacgtcatcgtctgggaccagggcatctggcagccccagggcgatccggccgct
gcctatgcggcgggcaagctcaagttcagcctggtcggcgagaaactgtccggcgactgg
accctggtgcgtacccgcctgcgcggcagcggcgacaaggagcagtggctgctgatcaag
gagcgcgacgacatcgcccgccccagcgacgagtacgacatcgtcgaggcgcagccgcag
agcgtgatcagcggcgcgttggtgggagggccgagcgccaaggccaagggcaagacgccg
agcaaggccaaggcgccgaagccggctgccgcctttcccgagagcctggcgccacagctg
gcaaccctgtccgaccgcccacctgagggcgattggctgtacgaggtgaagttcgacggc
taccgcattctcgcccgcatccgcgacggcgaggtgcgcctgttcacccgcaacggccac
gactggacgcagcgtctgccgctgcaggccaaggccctggccaagctgggcctgcacgac
agctggctggacggcgaggtggtggcgctcaacgaacagggcctgcccgactttcagcaa
ctgcaaaacgccttcgatatcggccgcagccacgacctcgtctactacctgttcgatgca
ccgttcatcaacggcgaggacctgcgccagaccccgctggagcagcgacgggcacagctc
aagctgctgctgggcaacacgcgcaacggcccgctgcgcttctctgccgcattcaccgcg
caccaccgcgacatcgtggaaagcgcctgcgccatgtccctggagggggtgatcggcaag
cgcgccggcagcctctacgtgtcgcgccgcagtgccgactggatcaagctcaagtgccgc
ctgcgccaggagttcgtcatcgttggccatacccagccgcaaggcagccgcagcggtttc
ggggcactgctgctggcagtcaacgaggacgacggcctgcgctacgccggacgcgtcggt
acggggttcggcgaagcggcgctgaaggcgctgcatcagcgtctgcaagagctggcacgc
gaggattcgccgctggcgcacaagctgaccgcagcacaggcccgcggcgtcagctgggtc
gagccgcagttggtcggcgaagtggaattcgccgaatggacgcgcgagggcatcgtgcgc
caggccagcttcgtcgccctgcgcagcgacaagccggcggcgcagatcgtccgcgagcgg
cccggtgcgccgcaatcctcgccaccgcgcaagccggctgccaaggcaggcggcaagccg
gtggtcgccggcgtggcgatcagcaatgcgcagcgggtgatcgaccccgacagcggcacc
agcaaactgcagctggcgcagttctacgaaagcatcgccgactggctgctgccgtacctg
aacaatcgcccggtatcgctgctgcgcgcaccggagggcatcggcggcgagcagttcttc
cagaagcatgccgagcgcctggccattcccaacatcaagcacctcgaccccgagctcgac
cccggccatgcccggctgatggagatcgacagcgtcgccgcgctggtgggcgcggcgcag
atgggctgcatcgaactgcacacctggggcgccaccagcgaccgcatcgagacgccggat
ctgttcgtgctcgacctcgacccggaccccgcgctgccctggcgcagcatgctcgaggcc
acccgcctgaccctgacggtgctcgacgaactgggcctgcaggcctttctcaagaccagc
ggcggcaagggcatccatatcatcgtgccgctggcacgacgcgccggttgggacgaggtc
aaggccttcgccaaggccatcgcccagttcatgaccagccagttgccggagcgcttcacc
gccacctccgggccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaacagc
cgcggcgccagcaccgtggccgcctattcggtccgtgcgcggccagggttgccggtgtcg
gtgcccatcagccgcgacgagctggatggcctgcgcagcgcccagcaatggacggtcggc
aatctgcagcagcgtctggatgggctgaagcaggatccctggcagggctacagcaaccgc
cagcgcctgacacgcgccatgtgggacaggctcggcgccaagcccccctcgtag

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