Pseudomonas mendocina ymp: Pmen_3217
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Entry
Pmen_3217 CDS
T00510
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmy
Pseudomonas mendocina ymp
Pathway
pmy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pmen_3217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_3217
Enzymes [BR:
pmy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pmen_3217
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pmen_3217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABP85970
UniProt:
A4XXA4
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All DBs
Position
3556803..3559316
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AA seq
837 aa
AA seq
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MAKAQSEYSRKRNFERTSEPAERTGKRRSKAGALRFVVQKHDARRLHYDFRLELDGTLKS
WAVPKGPSLDPRDKRLAVHVEDHPLEYASFEGSIAEGNYGAGDVIVWDQGIWQPQGDPAA
AYAAGKLKFSLVGEKLSGDWTLVRTRLRGSGDKEQWLLIKERDDIARPSDEYDIVEAQPQ
SVISGALVGGPSAKAKGKTPSKAKAPKPAAAFPESLAPQLATLSDRPPEGDWLYEVKFDG
YRILARIRDGEVRLFTRNGHDWTQRLPLQAKALAKLGLHDSWLDGEVVALNEQGLPDFQQ
LQNAFDIGRSHDLVYYLFDAPFINGEDLRQTPLEQRRAQLKLLLGNTRNGPLRFSAAFTA
HHRDIVESACAMSLEGVIGKRAGSLYVSRRSADWIKLKCRLRQEFVIVGHTQPQGSRSGF
GALLLAVNEDDGLRYAGRVGTGFGEAALKALHQRLQELAREDSPLAHKLTAAQARGVSWV
EPQLVGEVEFAEWTREGIVRQASFVALRSDKPAAQIVRERPGAPQSSPPRKPAAKAGGKP
VVAGVAISNAQRVIDPDSGTSKLQLAQFYESIADWLLPYLNNRPVSLLRAPEGIGGEQFF
QKHAERLAIPNIKHLDPELDPGHARLMEIDSVAALVGAAQMGCIELHTWGATSDRIETPD
LFVLDLDPDPALPWRSMLEATRLTLTVLDELGLQAFLKTSGGKGIHIIVPLARRAGWDEV
KAFAKAIAQFMTSQLPERFTATSGPKNRVGKIFIDYLRNSRGASTVAAYSVRARPGLPVS
VPISRDELDGLRSAQQWTVGNLQQRLDGLKQDPWQGYSNRQRLTRAMWDRLGAKPPS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggcgcagagcgaatacagccgcaaacgcaatttcgaacgcaccagcgagccg
gccgagcgcaccggcaagcggcgcagcaaggccggcgcgctgcgcttcgtggtgcagaag
cacgacgccaggcgcctgcattacgacttccgcctggagctggatggcaccctgaagagc
tgggcggtgcccaagggtccgagcctggacccgcgcgacaagcgcctggccgtgcacgtc
gaggatcacccgctggagtacgccagcttcgagggcagcattgccgagggcaactacggc
gccggcgacgtcatcgtctgggaccagggcatctggcagccccagggcgatccggccgct
gcctatgcggcgggcaagctcaagttcagcctggtcggcgagaaactgtccggcgactgg
accctggtgcgtacccgcctgcgcggcagcggcgacaaggagcagtggctgctgatcaag
gagcgcgacgacatcgcccgccccagcgacgagtacgacatcgtcgaggcgcagccgcag
agcgtgatcagcggcgcgttggtgggagggccgagcgccaaggccaagggcaagacgccg
agcaaggccaaggcgccgaagccggctgccgcctttcccgagagcctggcgccacagctg
gcaaccctgtccgaccgcccacctgagggcgattggctgtacgaggtgaagttcgacggc
taccgcattctcgcccgcatccgcgacggcgaggtgcgcctgttcacccgcaacggccac
gactggacgcagcgtctgccgctgcaggccaaggccctggccaagctgggcctgcacgac
agctggctggacggcgaggtggtggcgctcaacgaacagggcctgcccgactttcagcaa
ctgcaaaacgccttcgatatcggccgcagccacgacctcgtctactacctgttcgatgca
ccgttcatcaacggcgaggacctgcgccagaccccgctggagcagcgacgggcacagctc
aagctgctgctgggcaacacgcgcaacggcccgctgcgcttctctgccgcattcaccgcg
caccaccgcgacatcgtggaaagcgcctgcgccatgtccctggagggggtgatcggcaag
cgcgccggcagcctctacgtgtcgcgccgcagtgccgactggatcaagctcaagtgccgc
ctgcgccaggagttcgtcatcgttggccatacccagccgcaaggcagccgcagcggtttc
ggggcactgctgctggcagtcaacgaggacgacggcctgcgctacgccggacgcgtcggt
acggggttcggcgaagcggcgctgaaggcgctgcatcagcgtctgcaagagctggcacgc
gaggattcgccgctggcgcacaagctgaccgcagcacaggcccgcggcgtcagctgggtc
gagccgcagttggtcggcgaagtggaattcgccgaatggacgcgcgagggcatcgtgcgc
caggccagcttcgtcgccctgcgcagcgacaagccggcggcgcagatcgtccgcgagcgg
cccggtgcgccgcaatcctcgccaccgcgcaagccggctgccaaggcaggcggcaagccg
gtggtcgccggcgtggcgatcagcaatgcgcagcgggtgatcgaccccgacagcggcacc
agcaaactgcagctggcgcagttctacgaaagcatcgccgactggctgctgccgtacctg
aacaatcgcccggtatcgctgctgcgcgcaccggagggcatcggcggcgagcagttcttc
cagaagcatgccgagcgcctggccattcccaacatcaagcacctcgaccccgagctcgac
cccggccatgcccggctgatggagatcgacagcgtcgccgcgctggtgggcgcggcgcag
atgggctgcatcgaactgcacacctggggcgccaccagcgaccgcatcgagacgccggat
ctgttcgtgctcgacctcgacccggaccccgcgctgccctggcgcagcatgctcgaggcc
acccgcctgaccctgacggtgctcgacgaactgggcctgcaggcctttctcaagaccagc
ggcggcaagggcatccatatcatcgtgccgctggcacgacgcgccggttgggacgaggtc
aaggccttcgccaaggccatcgcccagttcatgaccagccagttgccggagcgcttcacc
gccacctccgggccgaagaaccgggtcggcaagatcttcatcgactacctgcgcaacagc
cgcggcgccagcaccgtggccgcctattcggtccgtgcgcggccagggttgccggtgtcg
gtgcccatcagccgcgacgagctggatggcctgcgcagcgcccagcaatggacggtcggc
aatctgcagcagcgtctggatgggctgaagcaggatccctggcagggctacagcaaccgc
cagcgcctgacacgcgccatgtgggacaggctcggcgccaagcccccctcgtag
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