Polynucleobacter necessarius: Pnec_0042
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Entry
Pnec_0042 CDS
T00683
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pne
Polynucleobacter necessarius
Pathway
pne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pnec_0042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pne03021
]
Pnec_0042
03400 DNA repair and recombination proteins [BR:
pne03400
]
Pnec_0042
Enzymes [BR:
pne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pnec_0042
Transcription machinery [BR:
pne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pnec_0042
DNA repair and recombination proteins [BR:
pne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pnec_0042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACB43370
UniProt:
B1XSP3
LinkDB
All DBs
Position
44492..48592
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQADKPAMSRLTEGLQAAFTSA
FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRIDRRRKMPVTILLKAIGLNNEQILANFFNFDHFSLTANGG
SMEFVPERLRGQLASFDVLDENGVVVIQKDKRINTKHIRELEAAKTKTIAVPDDYLIGRV
VARNIVDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQMAARIAIYRMLRPGEPPIEDAVEVLFQRLFYSEDTYDLSRVGRMKVNSRLNRPEMEG
PMVLSSEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLTNSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLMRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVSN
SKVSDEVVYLSAIEEAKYVIAQANATIDKSGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVV
LAARGGIVDYVDANRVVIRVNDDETTAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDR
VARGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTIIDVQVFTREGIERDARAQSIIQEELQRY
RLGLNDQLRIVEGDAFMRLEKLLIGKVANGGPKKLAKGTKIDKEYLADLDKYHRFDVRPA
DDEVASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRVDEMVRQQAKQAELREFLKQLYNETGRIEDIDNFTDEQITVLAENLRQGLPFATPV
FDGATEAEIGRMLELAYPEEVATSLKMTPSRQQMILCDGRTGDQFERPATVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIEIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactatagcttcaccgaacgcaagcgagtccgcaaaagctttgctaagcgagtaaat
aaccatcaggttccatacttgatcgcaacgcagctggaatcctacgctaaatttttacag
gctgataagccagcaatgtctcgtcttactgagggacttcaagctgcctttacatcagca
ttcccaattgtgtctaacaacggctatgcacgtatggaatacgtgtcttaccagttatca
cagccaccgtttgacgttaaagaatgtcaacaacgtggttacacataccactctgcctta
cgcgcaaaagttcgcttgattatttatgatcgcgaagcgcccaccaaggttaaagaggta
aaagagagcgaagtctacatgggtgaaattccactcatgacagaaaacggttcttttgta
attaacggcactgagcgcgtcatcgtttctcagttgcatcgttccccaggcgtgttcttt
gagcacgataagggcaagacacacagctcaggtaaattgctgttctcagcacgcatcatt
ccttaccgtggttcatggctcgacttcgagtttgatccaaaagatattctctatttccgc
attgaccgtcgtcgtaagatgcctgtcaccattttgcttaaagcaattggtttaaacaac
gaacagattcttgcgaacttctttaactttgaccatttctcattgactgctaacggtggc
tcaatggaatttgtgccagagcgtttacgtggtcagttggccagctttgatgtgctcgac
gagaatggcgttgtagtcattcaaaaagacaagcgtatcaatacaaaacacatccgcgaa
ctcgaagctgctaagacaaaaacgattgctgtaccagatgactatttaattggtcgtgtt
gttgcgcgcaatattgttgatccagactctggtgaaatcttggcttatgctaatgatgaa
atcactgaagagttgttggcgacattgcgcgatgcaggtatcaagcaattggaaaccatc
tacaccaatgatttagattctggtgcgtatatttctcagacattgcgtactgatgaaaca
gcagaccaaatggctgctcgtatcgccatctaccgcatgttgcgtcctggtgagcctcca
atagaagatgctgttgaagtcttgttccagcgcctgttctacagcgaagatacttatgat
ttgtcacgcgttggccgtatgaaggtcaacagccgtttgaaccgcccagaaatggaaggt
ccaatggttctgtcaagcgaagatattctcgacaccattaagtccctcgtggacttgcgt
aacggcaaaggtgaagtagacgacatcgatcacttaggtaatcgtcgtgtacgttgcgtt
ggtgagttggctgaaaaccaattccgtgctggtttgtcacgtgttgagcgtgcggttaaa
gagcgtctcggccaagccgaaactgaaaacctcatgccgcatgacttgactaacagcaag
ccaatctcttctgctattcgtgagttcttcggttcttcacagttgtcccagtttatggac
caaaccaacccactctcagagattacgcacaagcgtcgtatttctgcattgggacctggt
ggtttgatgcgcgagcgcgcaggcttcgaagtgcgcgacgtgcatccaacccactacgga
cgtgtttgcccaatcgaaactccagaaggaccaaacattggtttgatcaactcactcgca
ctgtttgcgcgtttgaatgagcatggtttccttgagactccataccgcaaggtttccaat
agcaaggtaagcgatgaagttgtatacctctctgcgattgaagaagccaagtatgtgatt
gctcaggcgaatgcaacgattgataagagcggtaaattggctgacgaattggtttctgct
cgtcaagctggtgaaaccatgatggttagtccagaacgcattgatttcattgacgttgct
cctagccaaatcgtttcagctgccgcctcactcgttccattcctagagcacgatgatgcg
aaccgtgcgttgatgggtgcgaacatgcagcgccaagcggttccttgcttgcgtccagat
aagccgttggttggtactggtttagagcgtattgttgcggttgactccggcactgttgta
ttagcagcacgtggcggtattgttgattacgttgatgcaaatcgtgttgtgattcgcgtg
aacgatgatgagactacagctggtgaagttggtgtggatatttataacctcattaaatac
acccgctcaaaccaaaacaccaacatcaaccaacgtccaatcgttaaggttggcgatcgt
gtagcccgcggcgacgtggttgctgacggcgcatctaccgatttgggcgaattggccttg
ggtcagaacatgactgtggcatttatgccatggaatggttacaacttcgaagattcaatc
ttgatttctgagaaagttgttgctgatgatcgctacacctctattcatattgaagagttg
tcagtggttgcgcgtgataccaagcttggttcagaagaaattactcgcgatatttccaat
ttggcagagtcacaactctcccgtttggacgaaagcggcattgtttacatcggcgctgaa
gttgaggccggcgatgtgttggttggtaaggtgactccaaagggcgagacaactctcact
cctgaagagaagctcctccgtgcgatctttggcgaaaaagcatctgacgttaaagatacc
tctttacgcgttccatcaggaatgatcggtactattatcgatgttcaagtcttcactcgt
gaaggtattgagcgcgatgcccgtgcacagtccatcattcaagaagaattacaacgctat
cgtttgggcttaaacgatcagttgcgtattgttgagggcgatgccttcatgcgtttagag
aagttgttgattggcaaagttgccaacggcggccctaagaaattagctaaaggcaccaag
atcgacaaggaataccttgctgatttggataaataccatcggtttgatgttcgtccagca
gatgatgaagttgcctcacaagttgaagcaattaaatcctctatcgaagcgaaacgtaaa
cagtttgatgaagcttttgaagagaagcgcaccaaacttactcagggcgatgatttgcag
cctggcgtaacgaagatggttaaggtgtacttggctgttaaacgtcgtttgcagcctggt
gacaagatggccggtcgtcacggtaacaagggcgtggtttctaaaattgcccctgcggaa
gacatgccatttatggctgacggacgccctgttgacatcgtcttgaacccattgggcgtt
ccttcccgtatgaacgttggtcagatcttggaaacccacttaggttgggcggctcaaggt
attggtaagcgtgttgacgagatggttcgtcaacaagccaaacaagctgagttacgtgag
ttcctcaaacaactttacaacgaaacaggccgtattgaagacattgacaacttcactgac
gagcaaatcacagtattggctgaaaatcttcgccaaggcttgccatttgcaactccagtg
tttgacggtgctacagaagcagaaatcggacgcatgctcgagttggcttatccagaagaa
gtagctacttctttgaagatgacgccttcacgtcagcaaatgattttgtgtgacggtcgt
actggtgatcagtttgagcgcccagcaaccgttggcgtaatgcacgtcttgaaactccac
catttggttgatgacaagatgcatgctcgttcaactggaccttactctttagtaacgcaa
cagccattgggcggtaaagcccaattcggtggtcagcgctttggtgagatggaagtctgg
gccctcgaagcatacggtgcttcatatgtcttgcaggaaatgctgacagtgaagtctgat
gacgtcgcaggccgtaccaaggtttacgaaaacatcgtcaagggcgagcacacgattgat
gctggcatgcccgaatccttcaacgtgctggtaaaagaaatccgttcgttgggtattgag
attgacatggagcgcaactga
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integrated database retrieval system
