Pseudoalteromonas nigrifaciens: PNIG_a0837
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Entry
PNIG_a0837 CDS
T05271
Symbol
rpoS
Name
(GenBank) RNA polymerase nonessential primary-like sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
png
Pseudoalteromonas nigrifaciens
Brite
KEGG Orthology (KO) [BR:
png00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
png03021
]
PNIG_a0837 (rpoS)
Transcription machinery [BR:
png03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PNIG_a0837 (rpoS)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF6279
Motif
Other DBs
NCBI-ProteinID:
ASM53093
UniProt:
A0A379HDL8
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Position
I:786567..787541
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AA seq
324 aa
AA seq
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MADAAKVDKNTLVDNKLDETAVDDDSTPLLEAVDDDVFVKEEVTKNLDATQLYLGEIGFS
PLLSAEEEVFFSRKSLKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLI
RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELTQK
LDHEPTAEEIAACLDKPVEDVTKMLRLNEKIASVDMPIGGENDTALLDIIADDNNVGPEG
EVQNNDMNKHIVDWLGELNPKQREVLARRFGLLGYEPSTLEDVGREIGLTRERVRQIQVE
ALRRLKDILQQEGLSTESLFEHFA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcagcaaaagttgataaaaacaccctcgtagataataaattagatgaaact
gctgttgatgatgattcaacaccgctgcttgaagctgtggatgatgacgtttttgtcaaa
gaagaagtcactaaaaatttagatgctactcagctttatttaggtgaaattggtttttct
ccgttgttaagcgctgaggaagaggtgtttttttctcgtaaatctttaaaagggtgcgaa
gcgtctcgcaagcgcatgattgaaagtaacttgcgccttgtagtaaaaattgctcgtcgt
tataacaaccgaggtttagcgttacttgatttaattgaagagggtaacttaggcttaatt
cgcgccgtagagaagtttgatcctgagcgtggctttcgattttctacttatgcaacatgg
tggatacgccaaacgatagaacgcgccattatgaatcaaacgcgcactattcgcttgcca
atacatgtagtaaaagaacttaacgtatatttacgtaccgcgcgcgagctaactcaaaaa
ttagatcatgaaccaaccgccgaagaaatagcagcttgtttagataagccggttgaagat
gtcaccaaaatgctgcgcttgaatgaaaaaatagcctcggttgatatgccgatcggcggc
gaaaacgataccgctttgctcgatattattgccgatgacaacaatgttggtcctgagggc
gaagtacaaaataacgatatgaataaacacattgttgactggttaggagagctaaaccca
aagcagcgtgaggtattagcccgtcgctttggtttattaggctatgagccatcaacgctt
gaagatgttggccgcgaaatagggttaacccgtgaacgcgttagacaaattcaggtagaa
gcattacgtcgcttaaaagatattttgcaacaagaaggcttaagtacagagagtttattt
gagcactttgcgtaa
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