KEGG   Pseudoalteromonas nigrifaciens: PNIG_a0837
Entry
PNIG_a0837        CDS       T05271                                 
Symbol
rpoS
Name
(GenBank) RNA polymerase nonessential primary-like sigma factor
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
png  Pseudoalteromonas nigrifaciens
Brite
KEGG Orthology (KO) [BR:png00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:png03021]
    PNIG_a0837 (rpoS)
Transcription machinery [BR:png03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PNIG_a0837 (rpoS)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 DUF6279
Other DBs
NCBI-ProteinID: ASM53093
UniProt: A0A379HDL8
LinkDB
Position
I:786567..787541
AA seq 324 aa
MADAAKVDKNTLVDNKLDETAVDDDSTPLLEAVDDDVFVKEEVTKNLDATQLYLGEIGFS
PLLSAEEEVFFSRKSLKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLI
RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELTQK
LDHEPTAEEIAACLDKPVEDVTKMLRLNEKIASVDMPIGGENDTALLDIIADDNNVGPEG
EVQNNDMNKHIVDWLGELNPKQREVLARRFGLLGYEPSTLEDVGREIGLTRERVRQIQVE
ALRRLKDILQQEGLSTESLFEHFA
NT seq 975 nt   +upstreamnt  +downstreamnt
atggctgatgcagcaaaagttgataaaaacaccctcgtagataataaattagatgaaact
gctgttgatgatgattcaacaccgctgcttgaagctgtggatgatgacgtttttgtcaaa
gaagaagtcactaaaaatttagatgctactcagctttatttaggtgaaattggtttttct
ccgttgttaagcgctgaggaagaggtgtttttttctcgtaaatctttaaaagggtgcgaa
gcgtctcgcaagcgcatgattgaaagtaacttgcgccttgtagtaaaaattgctcgtcgt
tataacaaccgaggtttagcgttacttgatttaattgaagagggtaacttaggcttaatt
cgcgccgtagagaagtttgatcctgagcgtggctttcgattttctacttatgcaacatgg
tggatacgccaaacgatagaacgcgccattatgaatcaaacgcgcactattcgcttgcca
atacatgtagtaaaagaacttaacgtatatttacgtaccgcgcgcgagctaactcaaaaa
ttagatcatgaaccaaccgccgaagaaatagcagcttgtttagataagccggttgaagat
gtcaccaaaatgctgcgcttgaatgaaaaaatagcctcggttgatatgccgatcggcggc
gaaaacgataccgctttgctcgatattattgccgatgacaacaatgttggtcctgagggc
gaagtacaaaataacgatatgaataaacacattgttgactggttaggagagctaaaccca
aagcagcgtgaggtattagcccgtcgctttggtttattaggctatgagccatcaacgctt
gaagatgttggccgcgaaatagggttaacccgtgaacgcgttagacaaattcaggtagaa
gcattacgtcgcttaaaagatattttgcaacaagaaggcttaagtacagagagtttattt
gagcactttgcgtaa

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