KEGG   Parastagonospora nodorum: SNOG_06940Help
Entry
SNOG_06940        CDS       T01161                                 

Gene name
SNOG_06939
Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pno  Parastagonospora nodorum
Pathway
pno03030  DNA replication
pno03410  Base excision repair
pno03420  Nucleotide excision repair
pno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SNOG_06940 (SNOG_06939)
   03410 Base excision repair
    SNOG_06940 (SNOG_06939)
   03420 Nucleotide excision repair
    SNOG_06940 (SNOG_06939)
   03430 Mismatch repair
    SNOG_06940 (SNOG_06939)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pno03032]
    SNOG_06940 (SNOG_06939)
   03400 DNA repair and recombination proteins [BR:pno03400]
    SNOG_06940 (SNOG_06939)
Enzymes [BR:pno01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SNOG_06940 (SNOG_06939)
    6.5.1.6  DNA ligase (ATP or NAD+)
     SNOG_06940 (SNOG_06939)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SNOG_06940 (SNOG_06939)
DNA replication proteins [BR:pno03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SNOG_06940 (SNOG_06939)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SNOG_06940 (SNOG_06939)
DNA repair and recombination proteins [BR:pno03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SNOG_06940 (SNOG_06939)
   NER (nucleotide excision repair)
    Other NER factors
     SNOG_06940 (SNOG_06939)
   MMR (mismatch exicision repair)
    Other MMR factors
     SNOG_06940 (SNOG_06939)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 5974190
NCBI-ProteinID: XP_001797300
UniProt: Q0UMS4
LinkDB All DBs
Position
Unknown
AA seq 856 aa AA seqDB search
MAPKQATLGKFFGNPNANTSKQQSKLSFSTKPKAQKIDAEIKDELESSTGDVKAEPASTA
EEIEVKQETSGEAMELDSSSSETGKKRPAKEEEEEDSEDEPPMKRQRRKPSKDSEPSKKP
KPAAKKSEKASVKSNKQPTKVKAAVLEDDDDEVATTALASKGKKITGKSPTPALPDYDGS
AKEEEEETLSSDEEPEEMKKKAREKVQTALKSNTKDPYPDWKAGDPVPYAALCTTFSKIE
MTTKRLEILAHCSLFLRQVLRLTPSDLLPTTLLMINKLAADYTGVELGIGESLIKKAISE
STGRTLQHINSDHNEIGDLGLVAAKSRSKQPTMFKPKPLTIQGVHKGLLAIATIEGQGAQ
GRKVDGIKKLLSAADSHNAGKHIDIEENKGGPSESKFIVRTLEGKLRLGLAERTVVVALA
QAMIFHEMSQNGKTPSTTDLGTAESILKTVYSELPSYEVIIPAMLEHGILQLRENCRLQP
GVPLKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHFVAHDADMEMATTAPSAGK
SDRGVSNIFSRNSEDLSKKYPDILAKLPTWIKEGTKSFVLDCETVAWDMVEKKVLPFQQL
MTRKKEGFKVCVFAFDILYLNGEALVNKSFRERREHLQDAFIPILLEDSVKASCEGLMVK
MLDGPESSYEPSKRSQNWLKVKKDYLAGVGDSLDLVVLGAYFGKGKRTSWYGAFLLACYN
PNTQNYESVCNIGTGFSEAILETLHEQLSEIVIDKPKPFYTHSVGNKDQPDVWFEPRYVW
EVKTADLTLSPRYRAAADEVSGGGKGISLRFPRFIKERDDKKPDQASTSKMIAEMYQRQE
SVSKTKGPSADDDFEY
NT seq 2571 nt NT seq  +upstreamnt  +downstreamnt
atggcgccgaaacaggctactttgggaaagttctttggaaacccgaacgcaaacacatcg
aaacagcagtcgaagctgtctttttcgaccaaaccgaaggcccaaaagatagatgcagaa
atcaaagatgagctggagtcatctaccggagatgtcaaagccgagcccgcatccacggca
gaggagatagaagtcaagcaggagacaagcggcgaagcgatggaattagacagctcctcc
tcagagactggaaagaagaggcctgcgaaggaagaagaagaagaagactcagaagatgag
ccccccatgaagcgtcagcggagaaagccctcaaaagactccgaaccttcgaagaagccg
aagccagcagcaaagaaatctgagaaggcgtctgtaaagtcgaacaaacaacctacgaaa
gtcaaagcagcggtgctggaagacgacgacgacgaagttgctacaacagccttggccagc
aaaggcaagaagatcactggaaagtcacctacgcctgcactaccagactacgacggcagt
gcgaaggaagaagaagaagagacacttagctcagacgaggagccagaggagatgaagaaa
aaagcgcgggaaaaggtgcagactgccctcaagtccaatacaaaggacccatatcctgac
tggaaggctggggaccctgtaccgtacgccgcgctgtgcactaccttttcgaagatcgaa
atgaccacgaaacgactggagatattggcacattgctcgctgtttctacgacaggtgttg
cgtttgacaccatccgacctgctacccactactctactcatgatcaacaagctcgcggcc
gactacacgggagtcgagcttggcattggggagtcactcatcaagaaagccatttcggag
agtacaggtcgaaccctgcagcacatcaacagcgatcataacgagatcggtgaccttgga
cttgtggcggccaagagtcgatcgaagcagccaacgatgttcaagcccaagcctctcact
attcaaggcgtgcacaaaggcctgttggcgattgcgaccatcgaggggcagggtgcgcaa
ggacgaaaagttgatggcatcaagaagctactttccgctgctgattctcacaatgctggt
aagcatatcgatatagaagaaaacaagggtggtcctagcgaatcgaaattcatcgtgcgc
acacttgagggtaagctcaggttgggccttgccgagaggaccgttgttgttgcgctcgct
caggccatgatatttcacgaaatgtcgcaaaacggcaagacaccctcaacgactgacctg
ggaacggccgagtcgatactcaagactgtgtacagtgagctcccaagttacgaagtcatc
attccagcaatgttggagcatggcattctgcagctgcgtgaaaactgtcgactgcaaccc
ggtgtaccactcaaacctatgcttgccaagccaacgaaatccatcacagaggttcttgac
cgctttgaaggcaaagattttacatgcgagtacaagtacgacggagagcgagcccaaatc
catttcgtcgcgcacgacgccgatatggaaatggcgacgacagctccgtccgccggaaag
agcgaccgcggagtatccaacattttctctaggaactcggaggatttgtccaagaaatac
ccagatattctcgcaaaactacccacttggatcaaagaaggcacaaagagctttgttttg
gactgcgaaacagtggcctgggacatggtcgaaaagaaagtcctgccattccaacagctc
atgacccgtaagaaggaaggattcaaggtctgcgtctttgcctttgacatactctacctc
aacggtgaagcattggtcaacaagtctttccgtgagcgccgcgaacacctccaagatgca
ttcattcctatattgcttgaagactcagtgaaagcgtcctgcgagggtctaatggtgaag
atgcttgacggcccggaatcctcatatgagccatccaagcgatctcaaaactggctgaag
gtcaagaaagactaccttgctggcgttggcgactcactcgatcttgtggttttgggagcg
tacttcggcaaaggcaagagaaccagctggtacggagctttcttgctcgcgtgctacaat
cctaacacacagaactacgagtcggtctgcaacatcggtactggcttttccgaagctatt
ctcgagaccctacatgagcagttgtcggaaatcgtcattgacaagccaaagccgttctac
acgcactccgtgggcaacaaggaccagcctgatgtatggtttgagccgcgctacgtgtgg
gaagtcaagactgcagacctcactctatcaccaagatatcgggctgcagctgacgaggtc
tctggtggcggcaagggtatcagtttacgttttccccgtttcatcaaggaaagggacgat
aaaaagccagatcaggcgtccacatcgaagatgatcgcggagatgtatcaacggcaggag
agcgtatccaagaccaaaggcccaagtgcggatgatgatttcgagtactag

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