Paenibacillus naphthalenovorans: IJ22_13090
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Entry
IJ22_13090 CDS
T04167
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IJ22_13090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnp03019
]
IJ22_13090
03016 Transfer RNA biogenesis [BR:
pnp03016
]
IJ22_13090
Enzymes [BR:
pnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IJ22_13090
Messenger RNA biogenesis [BR:
pnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IJ22_13090
Transfer RNA biogenesis [BR:
pnp03016
]
Prokaryotic type
tRNA degradation factors
IJ22_13090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
SPATA25
Motif
Other DBs
NCBI-ProteinID:
ALS21685
UniProt:
A0A0U2W2E5
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All DBs
Position
1317670..1319772
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AA seq
700 aa
AA seq
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MEKKVQMDLGGRPLILETGRLAKQANGAVLARYGETVVLCTVTASAEPKDLDFFPLTVNY
EERLYSVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVVAMVMSVDQE
CAPEITAMIGVSAALSISDVPFHGPIGGVIVGRVDGQFVINPTVEQAEKSDIHLVVAGTK
DAIMMVEAGAEEVPEEVMLEAIMFGHDEIRKIVAVQEQFAAEVGKPKMEVKLHSVDAEVS
QAVREFAAARLIEAVKVPEKHARQNAIDAVNNDAIEHFAAVYAETPEKMADVKETLYDIV
KEEVRRLITHDKVRPDGRGLEEIRPIECDINLLPRTHGSGLFTRGQTQALSVCTLGALGD
VQILDGLDLEESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALEPIIPSESEF
PYTIRLVSEVLESNGSTSQASICASTLALMDAGVPIKAPVAGIAMGLIKDGDHFSILTDI
QGMEDHLGDMDFKVAGTAKGVTALQMDIKIDGIDRAILSQSLEQAKKGRMFILNKMLERI
DQPKSQLSQYAPKIVTMQINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVYIASSN
EEMNEKARQIIEGIVREVVVGETYLGTVKRIEKFGCFVEILPGKEGLVHISQLSTERVGK
VEDVVKIGDAITVKVTEIDAQGRVNLSRKAVLTAQVPAQN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaaggtgcaaatggatctcggggggcgtccgctgattcttgaaaccggacgt
ttggccaagcaggccaacggagctgttttagcccgctacggtgagacggtcgtgctttgc
acggttacggcatcggctgaaccgaaagatttggattttttcccgctgacggtaaactat
gaggaacggctttattctgtagggaaaattccggggggattcatcaagcgggaaggacgt
ccgagcgagaaagccatactcgccagccgtttaacggatcgtccgattcggccgttgttc
ccggaaggtttccgtaacgatgtgcaggtcgtagcgatggtcatgagcgtggatcaggaa
tgcgcgccggagattacggcgatgatcggcgtatccgcggcgctcagcatttcggacgtg
ccgtttcacggtccgatcggcggtgtgattgtcggaagggtagatggacagttcgtcatc
aatccgacagtggaacaggccgagaaaagcgacattcatctggtagtggccgggaccaag
gatgccattatgatggtggaagccggtgcggaagaagttcccgaggaagtgatgctcgaa
gcgatcatgttcgggcatgacgaaatccgtaaaatcgttgccgtacaagagcaatttgct
gcagaagtcggcaaaccgaagatggaagtcaagctacacagcgtggacgcggaagtgagc
caggcggttcgcgagtttgcagctgcccgtctgatcgaagcggtgaaggttccagaaaag
cacgccagacaaaatgcgatcgatgcggtaaacaacgatgctatagagcactttgccgca
gtttatgcagaaactccggaaaagatggcggatgtgaaagaaacgctttacgatatcgta
aaagaagaagtgcgccgtttgattacgcacgacaaggtgcgtccggacggacgcggattg
gaggaaatccgcccgatcgagtgcgacatcaatctgctgcctcgtacgcatggatcagga
ctcttcacccgcggccaaacacaggcgctcagcgtttgtacgcttggggcactgggcgat
gtgcaaattcttgacgggctggatttggaagaatcgaaacggtttatgcatcattacaac
ttccctccgttcagtgtgggcgaggcgaggccgttgcgtcctccgggtcgtcgtgagatc
ggtcacggagcgcttggcgaacgtgcgcttgagccgattattccttcggaatccgaattt
ccttataccattcggcttgtttcggaggtattggaatccaacggttcgacgtcgcaagca
agtatttgcgccagtacactggctttgatggacgcaggcgttccgatcaaggcgccggtg
gcaggtattgccatgggactgattaaagatggagatcacttctccattttgacagatatt
caagggatggaagaccacctcggcgatatggactttaaagtggccggtacggccaaaggc
gttacggcactgcaaatggacatcaaaattgacggcattgaccgggctatcttgtcgcag
tcgctggagcaggccaagaaaggccgaatgttcatcctgaacaaaatgctcgagcgcatc
gatcagccgaaatcccagttgtcgcaatatgcgccgaaaattgtcacgatgcagatcaat
ccggacaaaatccgcgatgtcattggagcaggcggtaagatcatcaacaaaatcattgag
gaaaccggcgtgaaaatcgatatcgagcaggatggccgtgtgtacattgcctcgtcgaac
gaggagatgaacgagaaggctcgtcaaatcatcgaaggcatcgtccgcgaagtcgttgta
ggagaaacctatcttggcacggtcaagcgcatcgagaaattcggctgctttgttgaaatt
ttaccgggcaaagaaggattggtgcacatctcgcagctgtctaccgaacgcgttggcaag
gtagaggatgtagtgaagatcggtgacgcgattacggttaaagtcactgaaattgatgcc
cagggccgcgtgaatttatcgcgcaaagcggtattgacggcacaagttccggcacaaaac
taa
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