Paenibacillus naphthalenovorans: IJ22_28250
Help
Entry
IJ22_28250 CDS
T04167
Name
(GenBank) single-stranded DNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03410
Base excision repair
pnp03430
Mismatch repair
pnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IJ22_28250
03430 Mismatch repair
IJ22_28250
03440 Homologous recombination
IJ22_28250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_28250
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IJ22_28250
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IJ22_28250
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IJ22_28250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
ssDNA-exonuc_C
DHHA1
DUF2399
Motif
Other DBs
NCBI-ProteinID:
ALS23198
UniProt:
A0A0U2W9V0
LinkDB
All DBs
Position
complement(2774653..2777085)
Genome browser
AA seq
810 aa
AA seq
DB search
MLPTKARWSIGSVDPKAADALSQALNVSPLIARLLAVRGLTDIGHAARFLHGGTDQTHDP
FLLDGMADAVKRIRRAMESGEKIRVYGDYDADGVSSTTLMVHLLRQMNCRFDYYIPHRIY
EGYGLNIAALDAAKEQGVKLIVTVDTGISAVEQIAYANSIGLDVVVTDHHEPPDVLPPAY
AIINPKKPGCPYPFKQLAGVGVALKLAQAVLGRWPEELLEFAAIGTVADLMPLTEENRII
VKQGLERMRQTANFGIRALFRVAGIPLKDVNSTHIGFALAPRINASGRLLSADTSVRLLT
ATSEQEAEELAVELDQLNKERQRIVDEMAKQAVAMVEEQRSVDGELPKAIVLAQEDWNVG
VIGIVASKIVDKYYLPTIILGIDKETGMAKGSARSIAGFDMYRALTHCQDLMEHYGGHQM
AAGMTLAREHLPELARRMSALAMEWLAPEDFIPVMHADMLCEFSEVDLESIRQLELLGPF
GMGNPSPRFVFKELALKDMRTIGKEQQHLKLSLQCARNETAAAVDAVGFGKGRLAEWISP
TASIDVLGELSVNEWNGVQRPQIMIQDLGVHRVQLFDWRGTPRPDRKLSELCGRLKRHPQ
GSGRPPAVVVFGPEPPPNLKLSGAGFALWCASLHGQFRPCNEAAKDNALSEAHDVMLYSL
PERMEQLDALAAEAASVQRYYAAFGGTEEDKQSGILPGRDMFKSVYGAVMALKPKPASAE
WTARRSGVPLPLTRFILDVFTELDLMESLGDGYRIIESTEKKDLTASLLYQSRMKRQDVE
QELMYSSAKELLSRLFARHKQTQTMLEGII
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgctaccaacaaaagccagatggagtatcggcagcgtagatccaaaagcggcagatgcg
ctttcccaagcattgaatgtttcgccgctcattgcccgtctgcttgcggtacgaggcttg
acggatatcggacatgccgcccgatttttacatggaggaacggatcagacccatgatccg
ttccttttagatggtatggccgatgctgtaaaacgtattcgccgggccatggagtccggc
gagaagatccgtgtgtacggtgattacgacgcggacggagtaagcagcacgacactgatg
gttcatctgctgcgacaaatgaactgccgctttgactattacataccccatcggatctat
gaaggatatggactgaatatcgccgcgttggacgcggctaaagagcagggagtcaagctg
atcgtaaccgtggataccgggatcagcgctgtggagcaaattgcatatgccaattcgatt
ggtcttgatgtggtggtcaccgaccatcacgaaccgccggatgtgctgccgccggcgtat
gctatcatcaatcccaagaagcccgggtgtccttatccgttcaagcagcttgcaggcgtg
ggcgtggcgctgaagctggcgcaagcggtcttgggacgttggccggaagagctgctggaa
tttgcggcgattgggacagtagctgatttgatgccgctgacggaagaaaaccgcatcatt
gtcaagcaaggactggagcggatgcggcagactgcgaattttggtatccgggcgcttttt
cgtgtggcgggaatcccgctgaaggacgtaaattccactcatatcggttttgctcttgct
ccgcgcattaatgcaagcgggcgtctgctcagtgcggatacgtccgtaagactgcttacg
gcgaccagcgagcaggaagcggaagaacttgcggttgaattggaccagttgaacaaagaa
cggcagcgcatcgtggacgagatggcaaaacaggccgttgcgatggtcgaagagcagcgc
agcgtggacggagaactccccaaggcgattgtgcttgcccaggaggattggaatgtcggc
gtcatcggtattgttgcttcgaaaatcgtcgacaaatattaccttccgacaatcatactg
gggatcgacaaagaaacggggatggcgaaaggctctgcacgttcgatagccgggttcgat
atgtaccgggcgcttacccattgccaggatctgatggagcattacgggggccaccaaatg
gctgccggaatgacgctggcgcgggagcatctgcctgagcttgcgcggcgaatgtcggca
ttggcgatggagtggctcgctccggaggattttattcccgtgatgcatgcggacatgctt
tgtgaatttagcgaggtcgatctggaaagcatccgccaattggagctgctcggtccgttt
ggcatgggcaatccttcaccccggttcgtattcaaggaactggcgctaaaagatatgcgt
acgatagggaaagaacagcagcacttgaagctgtccttgcagtgcgcaagaaacgagacg
gccgctgctgtagatgccgtcggcttcggcaaagggcggctggctgaatggatttcccca
accgcctccatcgacgttcttggcgagctgtccgtcaacgaatggaacggggtgcagcgg
cctcagatcatgattcaagacttgggggttcatcgcgtccaattgtttgattggcgcggg
acgccaaggcctgaccggaagctgtcggagctgtgcggacggcttaaacggcaccctcag
ggatctggacggccgccggccgtggtggtgttcggtccggaaccgccccctaacctgaaa
ctgtccggagccggctttgctctctggtgtgcctcattgcacggccagttccgtccgtgc
aatgaggccgccaaggacaacgcattatccgaggcccacgatgtgatgctgtattcgctg
ccggaacgaatggagcagcttgacgctctggcggcggaggccgcatcggttcaacggtat
tacgccgctttcggcggcacggaagaagataagcaatccgggatcttacccggccgggat
atgtttaaatcggtttacggcgcggtcatggcattgaagccgaaacccgcgagcgcagaa
tggacagccaggcgttccggagtgccgcttccgctgacccgtttcatattggatgtattt
acagaattggacttgatggaatctctgggtgacggctataggatcattgagtcaacggag
aagaaggatttgaccgcttctttactttatcaaagccggatgaagcggcaggatgtggag
caggaactgatgtactcgtcagcaaaggaactgctgtcaaggctctttgcccggcataag
caaacccaaaccatgttggagggaatcatatga
DBGET
integrated database retrieval system
