KEGG   Paenibacillus naphthalenovorans: IJ22_50350Help
Entry
IJ22_50350        CDS       T04167                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pnp  Paenibacillus naphthalenovorans
Pathway
pnp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pnp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IJ22_50350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnp03400]
    IJ22_50350
Enzymes [BR:pnp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IJ22_50350
DNA repair and recombination proteins [BR:pnp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IJ22_50350
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ALS25297
UniProt: A0A0U2UTM7
LinkDB All DBs
Position
5029081..5030040
Genome map
AA seq 319 aa AA seqDB search
MCPMKPVIPFEPVSESLVPSEDRWIHQVKWDGVRMLTYYDGRQCRLFNRKLNERTFQYPE
LTEVQKYCRADSVILDGEIIALGKDGKPSFHEVMKRDGIRKLDRVPQAMRQVPVAYMLFD
LLYYDGQWVLNKPLSARLELLNQTIIPGPVIQIVPSYDDGAALFQMTRQQGLEGIVSKEL
HSTYSINGKDRRWVKVKNYGDIAAVVGGYTLNGGIVNAVLVGVYTAEGKLWYIGHVGTGK
LKKSEWVELTAKLKPATIRDKPFDNEHPEMKGAYWVEPKLVVKLQYTEWRWQEGRTLRQP
SIQAFIDVPPRECVFDGVL
NT seq 960 nt NT seq  +upstreamnt  +downstreamnt
atgtgtccgatgaagcccgtcattcccttcgaaccggtgtccgaaagcttagtgccttca
gaggaccgttggattcaccaggtcaaatgggatggcgtccgtatgttgacttattacgac
ggccggcagtgccgtttatttaaccgcaaattgaatgaaagaacgttccaataccctgag
cttacggaagtacaaaagtattgccgggccgattccgttattcttgacggcgaaattata
gcgctgggcaaggacgggaagccctcgtttcatgaggtcatgaagcgggacggcatccgc
aagctggacagggttccacaggcgatgaggcaggtgcccgttgcttacatgctcttcgat
ctgctgtattatgacggccaatgggtattgaacaagccgctcagcgcccggttggagctg
ctgaaccaaacgattattccgggccctgtcattcagattgttccttcgtatgatgacgga
gcagctttatttcaaatgacgcggcagcagggcctggagggaatcgtcagcaaggagctt
cacagtacgtacagcattaacgggaaagacaggcgatgggttaaagtcaaaaattacggg
gatatcgcagcggtcgtcgggggctatacgctaaacggaggcattgtgaatgcggtactt
gtcggagtctataccgcggaaggaaagttatggtatatcggccatgtcggaaccggcaag
ctgaaaaaatccgaatgggtcgagttaacggccaagctgaaaccggcgaccatccgagac
aagcccttcgacaatgagcatccggaaatgaaaggggcttattgggtcgagcccaagctt
gtggtcaagcttcagtatacggaatggcgatggcaggaggggcgcaccttgcggcagcct
tccattcaggcttttatcgatgtgcctcctcgggaatgtgtgtttgacggagtgttatga

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