Paenibacillus odorifer: PODO_27850
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Entry
PODO_27850 CDS
T03326
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pod
Paenibacillus odorifer
Pathway
pod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PODO_27850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pod03021
]
PODO_27850
03400 DNA repair and recombination proteins [BR:
pod03400
]
PODO_27850
Enzymes [BR:
pod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PODO_27850
Transcription machinery [BR:
pod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PODO_27850
DNA repair and recombination proteins [BR:
pod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PODO_27850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIQ76716
UniProt:
A0A1R0X1J9
LinkDB
All DBs
Position
complement(6166317..6169928)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGSGMILRTVNEAVSAYQRGTAGLHARVAIP
AKALGKTCFTEEQQNAMLITTIGKIIFNEIYPSSFPYINEATKTNLLHGTPEKYFIYEKG
ANIRELIESAPEASAVGKEYLGLIIARCFETYHTTKTSMILDKIKQLGFTYSTRSGVTVA
VSDVIVPEEKVTILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNILLKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETGEIIVHRNDLIDSDKAEAIVNAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
IDAGDTSLLPGAFADIHEYEGANKEAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRNVKLSDPNAESELESLETV
PAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgaatttatgaaaatcggactcgcttctccggagaagatt
cgttcatggtcccgcggagaagttaagaaaccggaaaccattaactatcgtacattgaaa
ccggaaaaagagggtcttttctgtgagcgtatctttggaccacaaaaagactgggaatgt
cattgcggtaaatacaaacgtgtccgttataagggcgtagtctgcgaccgttgtggcgtt
gaggttacccgtgctaaagttcgtcgtgaacgtatgggtcacattgaattggctgctccg
gtatctcatatctggtatttcaaaggtatcccaagccgcatggggcttgcactagatatg
tctccaagatcacttgaagaaattatctatttcgcatcttatgttgtaacggatccaggt
gaaactccactggaaaagaaacaacttctgtccgagaaagaatatcgtagctaccgtgaa
aaatacggttacgggttccaagccggcatgggtgctgaagctgttaaaaagcttcttcaa
gatatcgacatcgataaagagctggaattcctcaaagaagaactgcgtacggcccaaggc
caacgccgtaaccgggcgatcaaacgtctggaagtcattgaagcattccgtaactccggc
aacaagcctgattggatgatcatggatgttcttccggttattcctccggagcttcgtccg
atggttcagttggatggtggccgttttgctacgtccgatttgaatgatctctatcgccgt
gttattaaccggaacaaccgtctgaaaagactgcttgatctcggtgctcctgacattatc
gtgcagaacgagaaacggatgctccaggaagctgtcgatgctctcatcgataacggccgt
cggggacgtccggtaaccggtcctggtaaccgtccacttaaatcgctcagccatatgctg
aaaggtaaacaaggacgtttccgccagaacttgctcggtaaacgggttgactactctgga
cgttccgttatcgttgtaggaccgtacctcaagatgtatcagtgcggacttcctaagaaa
atggcgctagaattgttcaagccttttgttatgaaagaattggttaataagggccttgcc
cacaacataaagagcgcgaaacgtaaagttgaacgcgtaagtcctgaagtttgggatgta
ctcgaagaagtaattagagaacacccagtgcttctaaaccgcgcaccaacacttcaccgt
ctcggtattcaagcatttgaaccgattttggtggaaggtcatgctattcgtcttcaccca
ctcgtatgtacggcgtacaatgccgactttgacggtgaccaaatggcggtgcacgttcct
ctgtctgcagaagctcaagcggaagcacgcattctcatgcttgcatctggtaatatcttg
aaccctaaagacggtaagccagttgtaacaccttcccaggatatggtccttggtactttc
tacttgaccatggataacaaggaagaaaagggtagtggtatgattctgcgtaccgttaac
gaagctgtatcagcttaccaacgcggaactgcaggacttcatgctcgtgttgctattccg
gctaaagcacttggcaaaacatgctttacggaagaacaacaaaatgcaatgttgattact
acgatcggtaagatcatctttaatgaaatctacccaagtagtttcccttatatcaacgaa
gcaaccaaaaccaacttgctgcacggcacaccagagaaatactttatctacgaaaaaggc
gcgaacattcgcgagctgattgaatccgctccagaagccagtgctgtaggtaaagaatat
ctgggtctgataattgctcgttgttttgaaacttatcacacaaccaaaacttctatgatt
ttggataaaattaaacagctcggattcacttactccacacgttctggtgttacagttgcc
gtgtcggacgttattgttcctgaggaaaaggttaccatcctgaaagagtctgaagctaag
gttgatgtggttgctaaccaatatcgccgtggtttgatcaccaatgacgaacggtatgac
cgtgttattgagatctggtcgaagactaaggatgatcttacgaacatcctgcttaagtcg
atggaccgtttcaactctatcatgctcatggttgactctaaagcgcgtggtaacaaatcg
cagatcactcagctgggtggtatgcgtggtctgatggcaacaccttcaggtcggattttc
gaattgccaatcaaggcgaacttccgtgaaggtcttaccgtcttggagtactttatctcc
actcacggagcgcgtaaaggtcttgccgataccgcacttcgtaccgctgactcagggtat
ctgacacgtcgtcttgttgacgttgcccaggacgttattgtccgtgaagaagattgtgga
accgataaaggcttcacagttagtcgtattcaggatggtaaagaggttatcgaggatctg
tatgaccgtattgaaggtcgttactgcttcgaaactgttcgtcacccagaaacaggcgaa
atcattgttcaccgcaatgatttgattgactccgataaagcggaggcaattgtaaacgca
ggtgtaactaagctgcaaattcgttctgtactgagctgccgtgcccgtcatggtgtttgt
aagaaatgttacggacgtaacttggcaactggtaaacacgttgagattggtgaagcagtt
ggtattattgccgcacaatctatcggtgaaccaggaacccagcttacaatgcgtacgttc
cataccggcggtgttgccggtgatgacatcactcaaggtttgccgcgtattcaggagttg
tttgaagctcgtaaccctaaaggtcaagctacaatcagtgagatcgatggcgtaatcaag
gaaatccgtgaaaccaaagaccgtcgcgaaatcgaggttcaaggtgaagcagaatccaag
acttattccataacttatggttcacgtctacgtgttagcgaaggccaagaaatcgaagcc
ggcgatgagctgacagacggttcgattgaccctaaagaaatgctgcgtatcaaagggatc
cgtggggtacaaaactacattctgcaagaagtacagcgtgtataccgtaaccaaggcgtt
gagatcaatgataagcacattgaagttatgatcaagcaaatgcttcggaagatccgtatc
attgacgcaggtgacacaagtctgttgccaggtgcatttgcggatattcatgagtacgaa
ggtgctaacaaggaagctattttgtctggtaaagagcctgctgttgctaaaccagtcttg
ctcggtattaccaaggcgtctcttgaaactgattccttcttgtcagctgcatcattccaa
gaaactactcgtgtcctaacagacgctgctatcaaaggtaaagtagataagttgcttgga
cttaaagaaaatgttattatcggtaagttgattcctgcaggtactgggatgaaccgttac
cgtaacgttaagctaagtgatccaaatgcagaaagcgaacttgaatcattagagacggtt
cctgctgaataa
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