Pseudomonas orientalis: BOP93_08185
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Entry
BOP93_08185 CDS
T05323
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
poi
Pseudomonas orientalis
Pathway
poi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOP93_08185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poi03019
]
BOP93_08185
03009 Ribosome biogenesis [BR:
poi03009
]
BOP93_08185
Enzymes [BR:
poi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BOP93_08185
Messenger RNA biogenesis [BR:
poi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BOP93_08185
Ribosome biogenesis [BR:
poi03009
]
Prokaryotic type
rRNA helicases
BOP93_08185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AUZ45582
UniProt:
A0A2L0RUC4
LinkDB
All DBs
Position
1864589..1866262
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattctcgccgct
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccttgcctattttgcattgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccaggtgtaaccgttgtggccgtttacggcggcgcgcccatgggcccacaactgaaa
gccatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgttgaaactgggcttcatggatgacttggaagtcatcttcaaggcgctgccaccgacc
cgtcagaccgtgctgttctcggccaccctgccgcagtcgatccgtgccatcgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttactgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgttg
gaagtcgaagacttcgatgcgctgatcatgttcgtgcgcaccaagcaagccacccttgac
ctggccagcgccctggaagccaaaggctacaaggccgctgcgctcaacggtgacatcgcc
cagaaccagcgtgagcgcgtgatcgattccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgctcgtggccttgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccggaatcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtgcgcctgccggacgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctggcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcactccgcgtgccctc
gctgcagcgttgctgcgcaaagccaccaacggtcaggccctgaccctggcggccatcgag
aaagaacgcccactggtaccgaacaacgcgccacgcggtgatcgtccagagcgtaccggc
gatcgtccggaccgtggcgatcgtgagcgtcgtgctccggttccattggccgaaggtcgt
gctcgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtccgtgat
agcttctccctggtggagctgccggaagatggtctggaaaaactgctggccaagttgaaa
gacactcgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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