Polaromonas sp. JS666: Bpro_1012
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Entry
Bpro_1012 CDS
T00343
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pol
Polaromonas sp. JS666
Pathway
pol03410
Base excision repair
pol03430
Mismatch repair
pol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bpro_1012
03430 Mismatch repair
Bpro_1012
03440 Homologous recombination
Bpro_1012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pol03400
]
Bpro_1012
DNA repair and recombination proteins [BR:
pol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Bpro_1012
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Bpro_1012
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bpro_1012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ABE42966
UniProt:
Q12ES6
LinkDB
All DBs
Position
complement(1028184..1029986)
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AA seq
600 aa
AA seq
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MKIQVRDVPPRSVWALQQGGVHPLLAQLYAARGVRSMDELDDGLGKLLPPASLRGTREAA
RLLADAMAAGQKICVVADYDCDGATACAVALRGLRLLGAQNVGYLVPDRVIDGYGLTPPI
AERVKATGADVLVTVDNGIASLEGVARAKALGMQVLVTDHHLPALKDGQVVLPAADVIVN
PNHPDCSFESKSMAGVGVMFYVLLALRAELRERGVFGRPAAGPPPGGTAPSGGSTAHEVA
SVGAIPQPKLDTLLPLVALGTVADVVKLDANNRRLVAQGLKRIRAGALPAGLAGLFTAAG
RHAALATTFDFGFALGPRINAAGRLSDMTLGIECLLTDDAARADELARMLDGINRERRDI
EAGMREQAQLAADAMIDEDEEPPPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQ
APGKEHELKGSGRSIAGFHLRDALDLVAKRHPGVLLRFGGHAMAAGCTIAEERFEQFEQA
LQQVAHEWLDAATLTRRLDTDGPLPAEYRRTDVVDTLHREVWGQGFAAPTFSEEVEVVSQ
RLVGEKHLALKLKHQGQPVDGIWFGHTTALPARVKLAFRLDADEWQGVKRVRFLVEAAEI
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacaggtacgcgatgtgccaccgcgcagcgtctgggcgctgcagcagggcggc
gttcaccccttgttggcgcagctttatgcggcgcggggcgtccgctcgatggacgaactc
gacgacggcctgggcaaattgctgccgccggcctcgctgcgcggcacccgggaagccgcg
cggctgctggccgatgccatggccgccgggcaaaaaatctgcgtggtggccgactatgac
tgcgacggcgccaccgcctgcgccgtggccctgcgcggcctgcgcctgctgggcgcacag
aacgtgggctacctggtgcccgaccgggtgattgacggctacggcctcacgccgccgatt
gccgagcgcgtgaaggccaccggcgcggatgtgctggtcaccgtggacaacggcattgcc
agcctggagggcgtggcacgcgccaaggccctgggcatgcaggtgctggtgacggaccac
cacctgccggcgctgaaggacggccaggtggtgctgcctgccgccgacgtgatcgtcaac
ccgaaccatcccgattgcagctttgaaagcaaatcgatggccggcgtgggcgtgatgttt
tatgtgctgctggcgctgcgcgccgagctgcgcgagcgtggcgtgttcggccgtcccgcc
gccgggccgcccccaggcgggacagccccctcggggggcagcacagcacacgaagtggca
agcgtgggggctattcctcaaccgaagctggacacgctgctgccgctggtcgcgctcggc
acggtggccgatgtggtgaagctggacgccaacaaccgccgcctggtggcgcagggactc
aagcgcattcgcgcgggcgcgctgccggccggcctggccggcctgttcaccgcagccggc
cgccatgcagcgctggccaccaccttcgatttcggctttgcactgggcccgcgcatcaat
gcggccggccgcttgagcgacatgacgctgggcattgaatgcctgctgaccgacgacgcg
gcacgggccgacgaactggcccgcatgctggacggcatcaatcgcgaacggcgcgacatt
gaagcgggcatgcgcgagcaggcccagctggcggccgacgcgatgattgatgaagatgaa
gaaccgccgccggccatcgcgatttttgaccccgagtttcatgaaggcgtggtcggcatc
gtggcctcgcgcatcaaggacaaactgcaccggccaacctttgtgtttgccgccagccag
gcgccgggcaaggaacacgaactcaagggctcgggccgctcgatcgccggctttcatctg
cgcgacgcgctggacctggtggccaagcgccacccgggtgtgctgctgcgctttggtggc
catgccatggcggccggctgcaccattgccgaagagcgctttgagcagttcgaacaagcg
ctgcaacaagtcgcccacgagtggctggatgccgccacgctgacgcgccgcctggacacc
gacggccccctgccggccgaataccgccgcaccgacgtggtcgacacgctgcacagggaa
gtctggggacagggctttgccgccccgacattcagcgaggaagtcgaggtggtgtcgcag
cggctggtcggtgaaaaacacctggccctgaaactgaaacaccagggccagccggtggac
ggcatctggtttggccacaccacggcgctgcccgcacgtgtgaagcttgctttcaggctg
gatgccgatgagtggcagggtgtgaaacgggtgcggtttctggtggaagcggctgaaatt
tag
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