Polaribacter sp. BM10: BXQ17_12390
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Entry
BXQ17_12390 CDS
T04746
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pola
Polaribacter sp. BM10
Pathway
pola03410
Base excision repair
pola03430
Mismatch repair
pola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BXQ17_12390
03430 Mismatch repair
BXQ17_12390
03440 Homologous recombination
BXQ17_12390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pola03400
]
BXQ17_12390
DNA repair and recombination proteins [BR:
pola03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BXQ17_12390
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BXQ17_12390
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BXQ17_12390
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
AA_permease_N
DSPc
Motif
Other DBs
NCBI-ProteinID:
AQS94824
UniProt:
A0A1U9L9T2
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Position
complement(2831131..2832816)
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AA seq
561 aa
AA seq
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MRWTLKQNPEKEKVEKLAKDLQVNKTIATILCQRNIETFDQAKSFFRPSLKDIHDPFLMK
DMDLAVERIEKAIANNENILIYGDYDVDGTTAVSLVASYLKTIHPNIATYIPDRYAEGYG
VSYIGIDFAHDNDFSLIIALDCGIKAIEKVAYASEKNIDFIICDHHKPGDKIPKAVAVLN
AKRDDCTYPFDELCGCGVGFKLIQALGSKRNQNIEDFIPYLDLVATAIAADIVPMNGENR
VLAYYGLQVINENPRNGIKAIIHQTKKTTLTITDVVFIIAPRINAAGRMKHGNYAVELLT
EMDFDSAVEFAAAIEIFNADRKDLDKKITDQALIQIIDNEEENCFTSVVYQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGDKLAASARSVKGFDVYNALHECEEFIEQFGGHKYAAGLT
LLPENYQNFKNKFEEVVKNTIDKELLTPEISVDATIELSEITPKFFRIIEQMAPFGPMNM
KPTFVSTCVRDNGYGKQVGADKSHLKLNVFQGDNKQTFGAIGFGLGNKIEHVKNDFDIAY
ALDENEWNGHKSIQLVLKDLK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagatggacgctaaagcaaaatccagaaaaagaaaaagtagaaaaattagcaaaagat
ttacaagtaaataaaacaattgctaccatactttgtcaaagaaatattgaaacttttgac
caagcaaaaagtttttttcgtcctagtttaaaagatattcacgatccttttttaatgaag
gatatggatttagcagtagaacgtatagaaaaagcaattgccaataatgaaaacatttta
atttatggcgattatgatgttgatggcacaactgcagtttctttggttgcctcttattta
aaaactattcatcctaatattgcaacttatattccagatcgatacgcagaaggttatggg
gtttcttatataggaattgattttgcgcatgacaatgatttctctttaattatagcttta
gattgcggtataaaagcaatcgaaaaagttgcttatgcatcagaaaaaaacatagatttt
ataatttgcgatcatcacaaacctggtgataaaataccaaaagccgttgcagttttaaat
gctaaaagagacgattgtacatatccttttgatgaactttgtggttgcggcgttggtttt
aaattgatacaggctttgggttctaaaagaaaccaaaacatagaagattttataccttat
ttagatttagttgctactgcaattgctgcagatattgtacctatgaatggcgaaaacagg
gttttggcatattatggcttgcaagttattaatgaaaatcctagaaacggaattaaagca
ataattcatcaaaccaaaaaaacaacgcttacaataacagacgtggtttttataattgca
ccaagaattaatgctgccggaagaatgaaacacggtaattatgctgttgaattattaaca
gaaatggactttgactcggcagtagaatttgctgcagcgatagaaatttttaatgccgac
agaaaagatttagataaaaaaattacagatcaagctttaattcaaattattgataatgaa
gaagaaaattgttttacatctgtagtttatcaagaagattggcacaaaggcgttatcggt
attgttgcctctagattaatagaaacctattacagaccaactttagtttttacaaagagt
ggcgataaattagctgcttctgcaagatcggtaaaaggttttgatgtttacaatgcatta
catgaatgcgaagaatttatagagcaatttggcggacataaatatgcagctggtttgact
ttattgccagaaaattatcaaaattttaaaaataagttcgaagaagttgtaaaaaataca
attgataaagaattattaactccagaaatttctgtggatgccacaatagaattatctgaa
attactccaaaattttttagaattattgaacaaatggctccttttggcccaatgaatatg
aaaccaacatttgtttctacttgcgttagagataatggttatggtaaacaagttggtgca
gataaaagtcatttgaaattaaatgtttttcagggagataataaacaaacttttggtgca
attggttttggtttgggtaataaaattgagcacgttaaaaacgattttgatattgcttat
gccttagatgaaaatgaatggaatggtcacaaatcgatacaattggttttaaaagactta
aagtaa
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