Pongo abelii (Sumatran orangutan): 100936414
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Entry
100936414 CDS
T01416
Gene name
VIM
Definition
(RefSeq) vimentin
KO
K07606
vimentin
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon05169
Epstein-Barr virus infection
pon05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100936414 (VIM)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
100936414 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pon03019
]
100936414 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pon04812
]
100936414 (VIM)
04147 Exosome [BR:
pon04147
]
100936414 (VIM)
Messenger RNA biogenesis [BR:
pon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
100936414 (VIM)
Cytoskeleton proteins [BR:
pon04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
100936414 (VIM)
Exosome [BR:
pon04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100936414 (VIM)
Exosomal proteins of other cancer cells
100936414 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
DUF4515
DUF1664
TolA_bind_tri
TPR_MLP1_2
HALZ
DUF573
Laminin_II
CENP-F_leu_zip
Baculo_PEP_C
Golgin_A5
Jnk-SapK_ap_N
MdcG
Motif
Other DBs
NCBI-GeneID:
100936414
NCBI-ProteinID:
XP_024109584
LinkDB
All DBs
Position
10
AA seq
466 aa
AA seq
DB search
MSTRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGV
YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE
EIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS
LNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcacc
gcgagccggccgagttccagccggagctacgtgactacgtccacccgcacctacagcctg
ggcagcgcgctgcgccccagcactagccgcagcctctacgcctcgtccccgggcggcgtg
tatgccacgcgctcctctgccgtgcgcctgcggagcagcgtgcccggggtgcggctcctg
caggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacactcgc
accaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaag
gtgcgcttcctggagcagcagaataagatcctgctggccgagctcgagcagctcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcag
gtggaccagctaaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctggccgag
gacatcatgcgcctccgggagaaattgcaggaggagatgcttcagagagaggaagccgag
aacaccctgcaatctttcagacaggatgttgacaacgcgtctctggcacgtcttgacctt
gaacgcaaagtggaatctttgcaagaagagattgcctttttgaagaaactccacgaagag
gaaatccaggagctgcaggctcagattcaggaacagcatgtccaaattgatgtggatgtt
tccaagcctgacctcacggctgccctgcgtgacgttcgtcagcaatatgaaagcgtggct
gccaagaacctgcaggaggcagaagaatggtacaagtccaagtttgctgacctctctgag
gctgccaaccggaacaatgacgccctgcgccaggcaaagcaggagtccactgagtaccgg
agacaggtgcagtccctcacctgtgaagtggatgcccttaaaggaaccaatgagtccctg
gaacgccagatgcgtgaaatggaagagaactttgccgttgaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaatatgaaggaggaaatggctcgtcacctt
cgcgaataccaagacctgcttaatgttaagatggcccttgacattgagattgccacctac
aggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctcc
ctgaacctgagggaaactaatctggattcactccctctggttgacacccactcaaaaagg
acacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcag
catcacgatgaccttgaataa
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integrated database retrieval system