Populus trichocarpa (black cottonwood): 112325727
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Entry
112325727 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112325727
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
112325727
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
112325727
03036 Chromosome and associated proteins [BR:
pop03036
]
112325727
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
112325727
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
112325727
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
112325727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
112325727
NCBI-ProteinID:
XP_024448443
LinkDB
All DBs
Position
18:complement(9018371..9023169)
Genome browser
AA seq
497 aa
AA seq
DB search
MLKQILSKIPRKFPKSDPLDSTGIDCGNDSTCSGPPTNGGNSFSSRLNVVKRVSSAVFPA
SIMAGMEAVDPHLSFKDVSNLQKQNLFVSKLNLCCEVSDCSDPDKNAVQQDLKHQVLIDL
VDFVSSGSAKFTEPAIAAICKMCANNLFRVFPPKYRTVNTGGETEDEEPMFDPAWSHLQS
VYDLLLRFVSSVDAKAAKKHVDHAFILRLLELFDSVDPRERDCLKTILHRIYGKFMVHRP
FIRKAVSNIIYHFVFETERHNGIAELLEIFGSVISGFALPLKEEHKIFLWRALIPLHKPK
SVGIYHQQLTYCVVQFIEKDPRLTSPVIKGLLKYWPVTNSQKELMFISELEEILEMTGMD
EFQKIMVPLFRRIRCCLNSSHYQVAERAHLLWNNERILKLIEHNRQVIVPLVFSALEQNT
LNHWNQSVLIQTQHIRKMFCEMDEELVLACQRKLEEQDSLSSVEAEKRRLTWERLENAAD
LQPRADNILPVSCSVTC
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagcaaatccttagcaaaattccccgcaagttccccaaatctgatcctttggat
tctactgggattgattgtggcaatgattctacctgctcggggccacctacaaatggtggg
aattctttttctagtcggttgaatgttgttaaacgggtatcttcagcagtatttccagca
agcataatggctggaatggaggcagtggatccccatctatccttcaaagatgtctcaaac
ctgcagaagcaaaacctttttgtcagtaaattaaacctttgttgcgaggtttctgactgc
agtgatccagataaaaatgctgttcagcaagatcttaaacatcaagtgcttatagatctt
gtcgattttgtttcatccggatctgctaagtttactgaacccgcaattgctgcaatttgt
aagatgtgtgcaaataacctgtttagggtttttccacccaagtatcgtactgttaacaca
ggtggggaaacagaagatgaagaaccaatgtttgatcctgcttggtcacatttgcaaagt
gtgtatgatctactccttaggtttgttagttctgttgatgccaaggctgccaagaagcat
gttgatcatgctttcattttgagattacttgagctttttgattctgtggacccaagagaa
agagactgtttgaaaaccattctacatagaatttatggaaagttcatggtgcaccggcct
tttatccgaaaagcagttagcaatatcatctatcattttgtctttgaaactgaacgtcat
aatggaattgctgagctgttggaaatttttgggagtgttattagtgggtttgcattgcca
ttgaaagaggaacacaaaatttttctctggagggctttgattcctctgcacaaaccaaaa
tcagtgggtatttatcaccagcaactaacttattgtgttgtacagtttatagaaaaggat
ccaaggttgactagtcctgtgattaagggactgttgaagtattggcctgtgactaacagc
cagaaggaattgatgtttataagtgagctagaagaaatattagagatgactggtatggat
gagtttcaaaagatcatggtcccactatttcggcgaataagatgctgcctcaatagctct
cattatcaggtggctgaacgagctcacttgctatggaacaatgaacggatccttaaactt
attgaacataaccgtcaggttattgtgcctcttgtcttctcagcccttgagcagaacacc
ctgaatcactggaaccaatcagtacttattcagacacagcatattcggaagatgttctgt
gagatggatgaagaactagtgctagcctgccaacgtaagttggaggagcaagactctttg
tcaagtgtggaagctgagaagcggagattgacttgggagcgcctggaaaatgctgcagat
ctacaacctagagctgataatattttacctgtctcgtgctcggttacctgctag
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