Populus trichocarpa (black cottonwood): 7455018
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Entry
7455018 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X2
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7455018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7455018
03036 Chromosome and associated proteins [BR:
pop03036
]
7455018
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7455018
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
7455018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
PilN
Motif
Other DBs
NCBI-GeneID:
7455018
NCBI-ProteinID:
XP_002317654
UniProt:
A0A2K1YKL6
LinkDB
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Position
11:complement(17614308..17621081)
Genome browser
AA seq
1007 aa
AA seq
DB search
MFGASNPFGQSSNSPFGTTQPAFGQTSNASNNPFAPKPFGSPTTPFGAQTGSSIFGGTST
GMFGTPQTSSFSATNAFGSSTPAFGASSTPAFGASSTPAFGASSSSAFGGSSVFGQKPFG
GFGSTAQASPFGSTNQQSQPAFGNSLFGSTPFGAPTQSAFGATSTPAFGATNTPPFGSTN
TTQAFGATSTTPAFGSTSTTPAFGSTSTAPAFGAPSSAPAFGTPSTTPAFGSTATPGFGS
TGTTFTSSPLFGTGGAFGTSTTSGFGASTTTPAFGAPTTSAFGATSSPSFTFSSSPGFGQ
SASAFGSSPFGSTTSTFPAQTSPFGAQSTTSPFGNNGFAQSGFGAQRPGSRASPYAETAE
AEGGAQAGKLLSISAMTAYKDKSHEELRWEDYQLGDKGGPLPAGQSPGGGGFNVSASQPN
PFAPPTGLGQTSANIFSSTTTNLFAPKTQTSTPSFNTTSFGPSTSSNLFQSSTTPAFSAG
SSPSLFGSTSTPSFSSTPSLFSSTVGQGTASPFGSSMFNNTQPSLSFPSTTPSLGQATAF
SQPSPFGPSTTSSLFSSPSTGGLFSSTPSLITPNLGGFNQMTPSQPAPFQMSQPAQNAAG
MSGFAGVSNNLGQLSTPQSAVAIQPVPVTNPFGTLPAMPQMSIGRAGTTPSVQYGISSMP
VIEKPSPVRVSSLLTSRHLSQRRIRLPARKYYPKHDGPKVPFFSDEEETPSTPKADALFI
PRENPRALVIRPMDQWPSRASAEKASPVNASAPVHENGKISESDFANLSNGYTAGDKNKN
LAENGVIKEQAPHVKVNQKPNGVHEDHSAQKEESYMTLSGHRAGEAAIVYEHGADIEALM
PKLRRSDYFTEPRIQELAAKERAKPGFCRHVKDFVVGRHGYGSIKFSGETDVRRLDLESL
VQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQFTEGPKIEKYKEMLK
RKAEDQGAEFVSYDPVKGEWKFKVNHFSKYMLEEEEEDRDAQATADC
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcgctagcaatccttttggacaatcatcaaatagtccgtttgggacaacgcag
ccggcttttggtcagaccagtaatgcaagtaataatccttttgcgccgaagccatttggt
agtccaacaactccttttggtgcacaaacagggagttctatatttgggggcacttcaact
ggaatgtttggcacaccccaaacttcttcattctctgcaacaaatgcttttggtagctca
acgcctgcttttggagcatctagtacccctgcttttggagcgtctagtacccctgctttt
ggtgcttcatcgtcatcagcatttggtggttcttctgtttttggtcagaagccttttgga
ggctttgggtctactgctcaagcgagtccttttggaagcacaaatcagcagtcacaacca
gcttttgggaatagtttattcggttccacaccttttggtgcaccaactcagtctgcattt
ggcgctacaagtactccagcctttggcgctacaaacactccaccctttggttccacaaac
accactcaagcctttggcgccacaagcaccactccagcctttggctccacaagcaccact
ccagcctttggctccacaagcaccgccccagcctttggcgccccaagctccgccccagcc
tttggcaccccaagcaccaccccagcctttggctcaacggcgactcctggttttggtagc
acaggaactacatttaccagttccccgttgtttggaactggtggagcttttggaacttcc
accacttcaggttttggagcttcaactaccacacctgcctttggggcaccgactacttct
gcttttggggctacttcatcaccatcctttacgttttcatccagtccaggttttggccaa
tcagcttctgcttttgggagcagcccatttggaagtactacatcaacttttccagcccag
acttctccctttggagcccagagtacaacatcaccatttgggaacaatggctttgcccag
tcaggttttggggcgcaacgtcctggaagtagagcatcaccatatgcagaaacagctgag
gcagaaggtggtgcacaggctgggaaattattgtcgatatcagccatgactgcatacaaa
gataaaagccatgaggagctaaggtgggaggactatcaattgggagacaaaggtggaccg
cttcctgctggtcaatctcctggcgggggcggatttaatgtctcagcctcacagccaaat
ccttttgctcctccaactggacttggtcaaacgtctgcaaatatattttcttcaacaact
acaaacctgtttgctccaaaaactcaaacatctacaccttcattcaacacaacctccttt
ggcccttcaacatcttccaatctctttcagtcatcaacaacacctgcattctcagctggt
tcatctccgtctctttttggatcaacaagtacacctagttttagttcaacaccatccttg
tttagttctactgtaggccaaggaactgcttcaccatttggttctagtatgtttaataac
acccaaccatctctctcattcccatcaaccacaccttcactgggacaggctactgcattt
tcacagcccagtccatttggaccaagtaccactagttcattgttcagtagcccttccact
ggtggccttttctcaagcaccccgtctctgataactccaaatctgggggggtttaatcaa
atgacaccatctcaaccagcaccttttcaaatgtctcagccagctcagaatgcagctggt
atgagtggctttgctggtgtatcaaacaatttggggcaattgtctaccccacaaagtgct
gttgctatacaaccagttcctgttacaaatccatttggaacacttcctgcaatgcctcaa
atgtctattggtcgagctggaactacaccttcagttcaatatgggatttcttctatgcct
gtcattgagaaaccctctcctgttagagtatcatccttattgacttctcggcacctgtca
cagaggaggattaggttgcctgcgaggaaatattaccctaagcatgatggtccaaaggtt
ccatttttcagtgatgaagaagaaacgcccagtacaccaaaggcggatgctcttttcatt
ccgagggaaaacccaagagctctggtgattcgtcctatggaccagtggccttcaagggca
agtgcagagaaagcatctccagtgaatgcatctgcaccagtacatgagaatggaaaaatt
tcagaatcagactttgccaatctctcaaatggttacactgctggtgataaaaataaaaat
ttggctgaaaatggtgtaatcaaggagcaagccccccatgtcaaagtcaaccagaaacct
aatggagtccatgaggatcattcagctcagaaagaagagtcctacatgacactcagtggt
cacagagctggcgaggctgcaattgtgtatgagcatggagcagatattgaggcactaatg
ccaaaactgcgacgttctgactattttactgagcctcgtatccaggaactggcagccaag
gagagggctaaaccaggtttctgccgccatgttaaggattttgtggttggaaggcatggc
tatggaagcatcaagttctcgggtgaaacagatgttcgacggcttgatcttgagtccctt
gttcagtttaataaccgggaggttattgtgtacatggatgatagcaagaaaccacctgtt
ggacaaggtctcaacaagcccgctgaggtaacacttctcaacataaaatgctttgacaaa
aagactggacgtcagttcacagaaggaccaaaaatagaaaaatacaaggagatgctcaaa
agaaaggccgaagaccaaggcgccgaatttgtttcatatgaccctgttaaaggagagtgg
aagttcaaggtcaaccatttcagcaagtacatgctggaggaggaagaagaggatcgggat
gcgcaagctaccgcagattgttga
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