KEGG   Populus trichocarpa (black cottonwood): 7455018
Entry
7455018           CDS       T01077                                 
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X2
  KO
K14297  nuclear pore complex protein Nup98-Nup96
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    7455018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7455018
   03036 Chromosome and associated proteins [BR:pop03036]
    7455018
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     7455018
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    7455018
SSDB
Motif
Pfam: Nucleoporin2 Nup98_GLEBS PilN
Other DBs
NCBI-GeneID: 7455018
NCBI-ProteinID: XP_002317654
UniProt: A0A2K1YKL6
LinkDB
Position
11:complement(17614308..17621081)
AA seq 1007 aa
MFGASNPFGQSSNSPFGTTQPAFGQTSNASNNPFAPKPFGSPTTPFGAQTGSSIFGGTST
GMFGTPQTSSFSATNAFGSSTPAFGASSTPAFGASSTPAFGASSSSAFGGSSVFGQKPFG
GFGSTAQASPFGSTNQQSQPAFGNSLFGSTPFGAPTQSAFGATSTPAFGATNTPPFGSTN
TTQAFGATSTTPAFGSTSTTPAFGSTSTAPAFGAPSSAPAFGTPSTTPAFGSTATPGFGS
TGTTFTSSPLFGTGGAFGTSTTSGFGASTTTPAFGAPTTSAFGATSSPSFTFSSSPGFGQ
SASAFGSSPFGSTTSTFPAQTSPFGAQSTTSPFGNNGFAQSGFGAQRPGSRASPYAETAE
AEGGAQAGKLLSISAMTAYKDKSHEELRWEDYQLGDKGGPLPAGQSPGGGGFNVSASQPN
PFAPPTGLGQTSANIFSSTTTNLFAPKTQTSTPSFNTTSFGPSTSSNLFQSSTTPAFSAG
SSPSLFGSTSTPSFSSTPSLFSSTVGQGTASPFGSSMFNNTQPSLSFPSTTPSLGQATAF
SQPSPFGPSTTSSLFSSPSTGGLFSSTPSLITPNLGGFNQMTPSQPAPFQMSQPAQNAAG
MSGFAGVSNNLGQLSTPQSAVAIQPVPVTNPFGTLPAMPQMSIGRAGTTPSVQYGISSMP
VIEKPSPVRVSSLLTSRHLSQRRIRLPARKYYPKHDGPKVPFFSDEEETPSTPKADALFI
PRENPRALVIRPMDQWPSRASAEKASPVNASAPVHENGKISESDFANLSNGYTAGDKNKN
LAENGVIKEQAPHVKVNQKPNGVHEDHSAQKEESYMTLSGHRAGEAAIVYEHGADIEALM
PKLRRSDYFTEPRIQELAAKERAKPGFCRHVKDFVVGRHGYGSIKFSGETDVRRLDLESL
VQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQFTEGPKIEKYKEMLK
RKAEDQGAEFVSYDPVKGEWKFKVNHFSKYMLEEEEEDRDAQATADC
NT seq 3024 nt   +upstreamnt  +downstreamnt
atgtttggcgctagcaatccttttggacaatcatcaaatagtccgtttgggacaacgcag
ccggcttttggtcagaccagtaatgcaagtaataatccttttgcgccgaagccatttggt
agtccaacaactccttttggtgcacaaacagggagttctatatttgggggcacttcaact
ggaatgtttggcacaccccaaacttcttcattctctgcaacaaatgcttttggtagctca
acgcctgcttttggagcatctagtacccctgcttttggagcgtctagtacccctgctttt
ggtgcttcatcgtcatcagcatttggtggttcttctgtttttggtcagaagccttttgga
ggctttgggtctactgctcaagcgagtccttttggaagcacaaatcagcagtcacaacca
gcttttgggaatagtttattcggttccacaccttttggtgcaccaactcagtctgcattt
ggcgctacaagtactccagcctttggcgctacaaacactccaccctttggttccacaaac
accactcaagcctttggcgccacaagcaccactccagcctttggctccacaagcaccact
ccagcctttggctccacaagcaccgccccagcctttggcgccccaagctccgccccagcc
tttggcaccccaagcaccaccccagcctttggctcaacggcgactcctggttttggtagc
acaggaactacatttaccagttccccgttgtttggaactggtggagcttttggaacttcc
accacttcaggttttggagcttcaactaccacacctgcctttggggcaccgactacttct
gcttttggggctacttcatcaccatcctttacgttttcatccagtccaggttttggccaa
tcagcttctgcttttgggagcagcccatttggaagtactacatcaacttttccagcccag
acttctccctttggagcccagagtacaacatcaccatttgggaacaatggctttgcccag
tcaggttttggggcgcaacgtcctggaagtagagcatcaccatatgcagaaacagctgag
gcagaaggtggtgcacaggctgggaaattattgtcgatatcagccatgactgcatacaaa
gataaaagccatgaggagctaaggtgggaggactatcaattgggagacaaaggtggaccg
cttcctgctggtcaatctcctggcgggggcggatttaatgtctcagcctcacagccaaat
ccttttgctcctccaactggacttggtcaaacgtctgcaaatatattttcttcaacaact
acaaacctgtttgctccaaaaactcaaacatctacaccttcattcaacacaacctccttt
ggcccttcaacatcttccaatctctttcagtcatcaacaacacctgcattctcagctggt
tcatctccgtctctttttggatcaacaagtacacctagttttagttcaacaccatccttg
tttagttctactgtaggccaaggaactgcttcaccatttggttctagtatgtttaataac
acccaaccatctctctcattcccatcaaccacaccttcactgggacaggctactgcattt
tcacagcccagtccatttggaccaagtaccactagttcattgttcagtagcccttccact
ggtggccttttctcaagcaccccgtctctgataactccaaatctgggggggtttaatcaa
atgacaccatctcaaccagcaccttttcaaatgtctcagccagctcagaatgcagctggt
atgagtggctttgctggtgtatcaaacaatttggggcaattgtctaccccacaaagtgct
gttgctatacaaccagttcctgttacaaatccatttggaacacttcctgcaatgcctcaa
atgtctattggtcgagctggaactacaccttcagttcaatatgggatttcttctatgcct
gtcattgagaaaccctctcctgttagagtatcatccttattgacttctcggcacctgtca
cagaggaggattaggttgcctgcgaggaaatattaccctaagcatgatggtccaaaggtt
ccatttttcagtgatgaagaagaaacgcccagtacaccaaaggcggatgctcttttcatt
ccgagggaaaacccaagagctctggtgattcgtcctatggaccagtggccttcaagggca
agtgcagagaaagcatctccagtgaatgcatctgcaccagtacatgagaatggaaaaatt
tcagaatcagactttgccaatctctcaaatggttacactgctggtgataaaaataaaaat
ttggctgaaaatggtgtaatcaaggagcaagccccccatgtcaaagtcaaccagaaacct
aatggagtccatgaggatcattcagctcagaaagaagagtcctacatgacactcagtggt
cacagagctggcgaggctgcaattgtgtatgagcatggagcagatattgaggcactaatg
ccaaaactgcgacgttctgactattttactgagcctcgtatccaggaactggcagccaag
gagagggctaaaccaggtttctgccgccatgttaaggattttgtggttggaaggcatggc
tatggaagcatcaagttctcgggtgaaacagatgttcgacggcttgatcttgagtccctt
gttcagtttaataaccgggaggttattgtgtacatggatgatagcaagaaaccacctgtt
ggacaaggtctcaacaagcccgctgaggtaacacttctcaacataaaatgctttgacaaa
aagactggacgtcagttcacagaaggaccaaaaatagaaaaatacaaggagatgctcaaa
agaaaggccgaagaccaaggcgccgaatttgtttcatatgaccctgttaaaggagagtgg
aagttcaaggtcaaccatttcagcaagtacatgctggaggaggaagaagaggatcgggat
gcgcaagctaccgcagattgttga

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