Populus trichocarpa (black cottonwood): 7458812
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Entry
7458812 CDS
T01077
Name
(RefSeq) ATP-dependent DNA helicase DDM1 isoform X1
KO
K19001
ATP-dependent DNA helicase
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7458812
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
7458812
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Motif
Other DBs
NCBI-GeneID:
7458812
NCBI-ProteinID:
XP_024446882
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Position
19:complement(15235719..15272864)
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AA seq
751 aa
AA seq
DB search
MGSEVKSEASADSPTSVLEDEEQCNLKVEEEVFVEAKNGDASLISISMAEEEEKLLKSRM
KEEEIEKAAAEEAQLDESQFNRLDQLLTQTQLYSEFLLEKIDQITANGAEQESEPVEQKK
RGRGSKRKAAAQYNSRKAKRAVTAMLTRSKEVDKVEDANLTEEERAEKEQRELVPLLTGG
RLKSYQIKGVKWLISLWTNGLNGILADQMGLGKTIQTIGFLAHLKGNGLNGPYMVIAPLS
TLSNWVNEISRFAPSMDSIIYHGSKKQRDEIRRKHMPRSIGSKFPIIVTSYEIALSDAKK
YLRHYPWKYVVVDEGHRLKNSKCKLLKELKYLHVDNKLLLTGTPLQNNLAELWSLLNFIL
PDIFQSHEEFESWFDLSGKCNNETMKEEVEERRRAQAVTKLHAILRPFLLRRMKTDVEQM
LPRKKEIILYATLTEHQKKFQEHLINKTLEDYLREKLDTGRGMKGRLNNLMIQLRKNCYH
PDLLESAFDGSYFYPPVEQIVGKCGKFQLLDRLLNRLFALQHKVLIFSQWTKILDIMDYY
FSEKGFEVCRIDGSVKLDERKKQIQEFNDENSQFRIFLLSTRAGGLGINLTSADTCILYD
SDWNPQMDLQAMDRCHRIGQTKPVHVYRLTTAQSVEGRILKRAFSKLKLEHVVIGKGQFH
QERTKSTGTDLMEEEMLALLRDEETAEDKLIQTDISDEDLERVLDRSDLVVGSSSDDIEN
MAAAVSIPLKGPGWEVVVPTASGGVLSTLNS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgaagtgaaaagtgaagcctctgctgattctcctacttccgttcttgaagac
gaggagcaatgcaatttgaaagtagaagaagaggtgtttgtggaagcaaaaaatggggac
gcgtctcttatatcaatatctatggcggaggaggaagagaagctgttgaaatccaggatg
aaagaagaagagatagaaaaagcggcggcggaggaagctcaattggatgaaagccagttt
aatagattggaccagcttttaactcaaactcagctctattcagagtttctgctggaaaag
attgatcaaatcactgctaatggagcggagcaagagagtgaacctgtcgagcagaaaaag
agaggtcgtggatcaaaaagaaaagccgctgcgcaatacaattctaggaaagccaagaga
gcagttacagcaatgcttacaagatcaaaagaagttgacaaggttgaggatgcaaatttg
actgaggaagaaagagctgagaaagagcagagagaacttgtacctttgctaactggtggg
aggttgaaatcttatcagattaaaggtgtgaaatggttgatctctctctggacaaatggg
ctcaatgggatccttgcagatcaaatggggctcggaaagactatccaaacaattggtttc
ctagcacatctgaaagggaatggtttaaatggaccctatatggttattgcccctctttcc
actctctcaaattgggtgaatgagatttcaaggtttgctccttctatggactcaattatc
taccacggtagcaagaagcagagggatgagataaggaggaagcacatgcccagatcaatt
ggctccaaattcccaattattgttacttcctatgagattgcattatcggatgcaaaaaag
tatttgaggcattacccatggaagtatgttgtggttgatgaggggcaccggttgaaaaat
tcaaaatgcaaactgctgaaggagttgaaatacttgcacgtggacaataagctcttatta
actgggacacctctgcaaaacaatttggctgagctttggtcactgttgaatttcattttg
cctgatattttccaatcccatgaagaatttgagtcatggtttgatctgtcaggaaagtgc
aataatgaaacaatgaaggaagaagtagaagaaaggcgaagggctcaggctgtaaccaaa
ctccatgcaatattgcgtccctttctcctacggagaatgaaaactgatgtagagcagatg
cttcctcggaagaaagagatcatcttatatgctaccctgactgagcatcagaagaaattc
caggagcatttaatcaataagacactggaggactatttacgagagaagctggataccgga
cgtggcatgaaaggaaggcttaataatttgatgattcaacttcggaaaaattgctaccac
ccggatctcttagagtctgcctttgatggctcatatttctatccaccagttgaacagata
gttgggaagtgtggcaaattccaattgctggatagattgttgaatcgtttgtttgcactc
cagcacaaagttctgattttctcccagtggactaaaattttggatataatggactattat
tttagtgagaaaggatttgaagtttgtagaattgatggctctgtgaagttagatgaaagg
aagaaacagatccaggaattcaatgacgagaacagtcagtttaggatttttcttcttagc
acaagagctggtggattgggtatcaacctcacttcagctgatacctgtatcctgtatgac
agtgactggaaccctcaaatggatctgcaagccatggatagatgtcaccgaattgggcaa
accaagcctgttcatgtttacaggcttacaacagctcagtctgttgagggtcgtattttg
aaaagagcttttagtaaattgaagcttgagcatgtggtcattggaaaaggacagtttcat
caagagcgaaccaagtctaccggcacagatctcatggaggaggagatgctggccctgctt
cgggatgaagaaacagcagaagacaagttgatacagacagatatcagtgatgaagattta
gagagggtgttggatcgcagtgatttggtcgtaggctcatcatcagatgacatagaaaac
atggctgccgctgtttcaattcctctgaaagggcctggttgggaggtggttgtaccgact
gccagtggaggcgtgctctctacccttaatagttag
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