Populus trichocarpa (black cottonwood): 7463340
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Entry
7463340 CDS
T01077
Name
(RefSeq) protein argonaute 5 isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7463340
03036 Chromosome and associated proteins [BR:
pop03036
]
7463340
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
7463340
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
7463340
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
7463340
microRNA pathway
RISC loading complex
7463340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
7463340
NCBI-ProteinID:
XP_024464025
LinkDB
All DBs
Position
9:691660..698093
Genome browser
AA seq
969 aa
AA seq
DB search
MSRRGGGRRSETRRDQDSSAPSPSFQRGGGGGGRGRGGRGVSTPAPSPTPVRAPTSAAPG
YLSATAGPSAKPTPQAAYTAAAASSSSSVGELSQETAKKLTLGGLVPVSSKAIVPPRRPD
YGKIGKKCVIRANHFVVEVSDRDLFHYDVAITPEITSKKVNRDVISQLVRSYRESHLGNR
MPAYDGRKSLYTAGALPFEAKEFVVKLAERGDPASSSSSVKKERQFKVAIKYASKVDMYH
LKEFLSGRQADAPQETIQILDIVLRASPSEKYITVGRSFFSPDLGPKGDLGDGIEYWRGY
YQSLRPTQMGLSFNIDVSARSFYEPILVTEFVAKYFNFRDLSRPLSDQERVKVKRALRGI
KVQITYSDYTKSYKVTGISNLPVNKTMFTLDDKKTKVSVYQYFLERYNIGLKYTSLPPLQ
AGTDAKPIYLPMELCQIAGGQRYTKKLNERQVTALLRATCQRPSARENNIKQMVRQNDYS
KNALVRDEFGIQVKEELTLVDARVLPPPMLKYHDTGREARVDPRFGQWNMIDKKMVNGGR
IDFWTCLNFSTRVHRELPSEFCWQLMDMCNNKGMEFNPEPIIPIRSADSRQIEKALHDVH
KQCTAELANQKGKQLQLLIIILPDVTGSYGKIKRVCETELGIVSQCCQPQQAKKLSKQYM
ENVALKINVKAGGRNTVLNDAFHRRIPLLTDVPTIVFGADVTHPQAGEDAGPSIAAVVAS
MDWPEVTKYRGLVSAQAHREEIIEDLYKKYQDPKKGLVHGGMIRELLIAFKRSTGQKPFR
IIFYRDGVSEGQFSQVLLHEMQAIRQACGSLEEGYCPRVTFVVVQKRHHTRFFPADHNRR
DQTDKSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSSDGLQT
LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSDAGSSGGTAEFRPLPVIKE
NVKDVMFYC
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccgtggtggcggccgacgatccgaaactcgtcgtgaccaggactcatccgct
ccgtcaccttcatttcagcgcggtggtggtggtggaggccgtggccgtggtggaagaggc
gtctccactcctgctccgtctccaactccagttcgtgctcctacctcggcggcacccggc
tacctctccgcaaccgcaggtccttcggcaaaaccaactcctcaagcggcttatacagcg
gcggcggcttcgagttcctcttcagtcggggagctgagtcaagagaccgcaaagaagttg
acattgggagggctggtgcctgtctcttcaaaggcgatagtgcctccgcgacgaccagat
tatggaaagatagggaagaaatgtgtgattagagcgaatcattttgtagttgaggtttct
gatagagatctctttcactacgatgtggcaataactcctgaaattacatcaaagaaagtc
aatagagatgtaatatctcaacttgttcgttcttaccgtgagtctcatctgggcaaccgg
atgccagcttatgatggcaggaaaagtctatacactgctggggcattgccttttgaagca
aaggagtttgttgtgaagttggctgagaggggtgatcctgccagttcatccagttctgtc
aaaaaggaacgtcaatttaaggtggccatcaaatatgcatccaaagttgatatgtatcat
ttgaaggagttccttagtggtagacaagcggatgctccacaggaaaccatacaaatcctt
gacattgttctcagagcatcaccatcagagaagtacattactgttgggcgatcgtttttc
tcacctgatttgggtccaaaaggcgatctcggtgatggaatagaatattggagggggtat
tatcaaagtcttcggccaacccaaatgggactatctttcaatattgatgtgtcggccaga
tccttttatgagccaattttggtaactgagtttgtagcgaagtactttaattttagagac
ttatcaaggcctctttctgatcaggagcgtgttaaggtgaaaagggccttgagaggaatc
aaagtacaaattacttacagtgactacactaaaagctacaaggttactggcatatctaat
ctaccagtaaacaaaacaatgtttactctggatgataagaaaacaaaggtgtcagtctat
cagtattttttggagagatacaatattgggctgaaatatacatctttgcctccccttcaa
gctggaactgatgcaaaacctatttatttgcccatggagctttgtcagattgctggagga
caacgatacactaagaagctaaatgaaagacaagtcacagcccttttaagagcaacctgt
caacggccttctgctagggaaaataatattaagcagatggtaaggcaaaatgattacagt
aagaatgcgcttgtgagggatgaatttggaattcaagtgaaagaagaactcacattggtt
gatgctcgagtattaccccctcccatgcttaaatatcatgatacagggcgagaagctaga
gtggatccgcgctttggacaatggaacatgatagacaagaaaatggtgaatggaggcaga
atcgatttctggacctgtttgaacttctctacaagagtgcacagagagttgccatctgaa
ttttgttggcagttaatggatatgtgcaataacaaaggaatggaattcaacccagaaccc
attattccaatacgctcagctgattctaggcaaattgagaaggctcttcatgatgttcat
aagcaatgcactgcagaacttgcaaatcagaaggggaaacagcttcagctgctgattatt
attctacctgatgtcaccggatcctatgggaaaatcaaacgtgtttgtgaaactgagtta
ggaatagtttcacaatgctgtcagccccagcaggcaaagaagcttagcaaacaatacatg
gaaaatgttgctctcaaaattaatgtgaaggctgggggacgaaacactgtattgaatgat
gcttttcatagaagaattcctcttcttactgatgttcctactattgtttttggtgctgat
gtaacccatccacaagcgggagaagacgcaggcccatcaattgcagcagtagttgcttct
atggattggccagaggtaaccaagtatagaggacttgtctctgcacaggctcaccgtgaa
gaaattatcgaggatctttacaaaaaataccaggatccaaagaagggtttagttcatggt
ggaatgatcagggaactgttaattgctttcaaaagatccaccggccaaaaaccttttaga
attatattctacagagatggtgttagtgaaggtcaattcagccaagttctgctgcatgag
atgcaggcaatacgacaggcatgtggctccctagaagaagggtattgtcctcgggttacc
tttgtagtagttcagaaaaggcatcatacacgctttttccctgctgaccataacaggcgt
gatcagactgacaagagtggcaatatcttaccaggtacagttgttgatactaaaatttgc
caccctacagagtttgacttctacctaaacagtcatgctggaattcagggaaccagcaga
cctacacattaccacgtgttgtttgatgaaaacaacttcagttctgatggtttacaaacc
ctcactaacaatttgtgctacacgtatgcaagatgcactcggtctgtttccatagtgcct
cccgcatattatgctcatttggcagcttttagggcgcgatattacattgagggtgaaaca
tcagatgctggttcatctggtgggactgctgagttccgtcctcttccggttatcaaagaa
aatgtgaaggatgtgatgttttactgttga
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