KEGG   Populus trichocarpa (black cottonwood): 7465030
Entry
7465030           CDS       T01077                                 
Name
(RefSeq) probable E3 ubiquitin ligase SUD1 isoform X1
  KO
K10661  E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    7465030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7465030
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7465030
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   March proteins
    7465030
SSDB
Motif
Pfam: RINGv zf-RING_2 zf-ANAPC11
Other DBs
NCBI-GeneID: 7465030
NCBI-ProteinID: XP_024465981
LinkDB
Position
1:complement(31389753..31395724)
AA seq 1103 aa
MEIDSAVEPPPQQHPSTAEAPPESVNQTQSPSGSMGIEESYGAAAARFDDDEEEEGDVCR
ICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYSENAP
ARLPFQEFVVGMAMKTCHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFVEAQRLF
LSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDAEREDDGDQNGAR
AARQQPGQANRNVAGEANAEDAGGAQGIAGGGQIIQRNVENVAARWEMQAARLEAHVEQM
FDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGAVIFVPFSLGRIILYY
ISWLFSFASVPVLSTVMPLTDTALSLANITLKNALTAVANLTSEGEDSGVLGEVADMLNA
NVSGLNEVANNLSSPLSSDLLKGASVGTSRLSDVTTLAIGYMFIFSLVFFYLGIIALIRY
TRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWL
DVCTIRMFGKSMAQRVQFFVISPLASSLVHWVVGIVYMLHISIFVSLLRGVLRQGVLYFL
RDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDI
LVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHYWFTAVGWALGLTDFILPGPED
SGVQDNGNAEQGRQDRLQVAQLGGQDRAVVALAAADDQNRTTLTAGSSAEEDDSDEQSDS
DRYSFALRIVLLLVVAWMSLLIFNSVLIVVPISLGRALFNAIPLLPITHGIKCNDLYAFV
IGSYVIWTALAGARYSIEQIRTKRATVLFSQVWKWCSIVLKSLALLSIWIFVIPVLIGLL
FELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVR
EDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPVLGYPMAVNSAVYRFAWLGC
LCFSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRKLHNYGEDLGEEQNEAGTSSEAQNSNS
QDTGLIREADVGIRQRRANRQEA
NT seq 3312 nt   +upstreamnt  +downstreamnt
atggagatcgactccgcggtggagccaccgccacaacaacatccgagcaccgccgaagcc
ccccccgagagcgtaaaccagacacaatctccatccggttcgatggggatagaggagagt
tacggagcggcggcggcgaggtttgatgatgacgaggaagaggagggggatgtttgcagg
atatgtaggaatccaggagatgcggagaatccgttacggtatccttgcgcttgcagtggt
agtattaagtttgttcaccaggattgtctccttcagtggctcaatcatagtaatgctcgc
caatgcgaggtttgcaaacatccattttctttctctcctgtttattctgagaatgccccg
gcaaggcttccttttcaggagtttgtagtagggatggcaatgaagacttgccatgttctg
caattctttttgcgtctcagtttcgtgctttctgtctggcttctaattatacccttcata
acgttttggatatggaggttggcttttgtgaggagttttgttgaagcccagagattattc
ttaagtcatatctccactactgttattcttaccgattgtctgcatgggttcctgctttct
gcgagtattgttttcatttttcttggtgcaacttctttaagagattattttaggcattta
agagagcttggaggacaggatgctgagagagaagatgatggagaccaaaatggtgcccgt
gctgcaagacaacaaccaggacaggctaatagaaatgttgctggtgaggcaaacgctgaa
gatgctggtggagcacaaggaattgctgggggtggtcaaataatccaaaggaatgtggag
aatgttgctgctcgatgggagatgcaggcagctcgtctcgaggctcatgttgagcagatg
tttgatggtttagatgatgctgatggtgcagaggatgtgccctttgatgagcttgtgggc
atgcagggtcctgttttccatttagttgaaaatgcattcactgttttggctagcaatatg
atattccttggtgctgtaatcttcgtgccattttcattgggacggattatcctatactac
atatcatggcttttctcttttgcaagtgttcctgtgctgtcaacagtcatgcctcttact
gatactgccctctccttagcaaatatcaccttgaagaatgcattaactgctgttgcaaat
ttgacatctgaaggtgaagacagtggggttcttggtgaggttgcagacatgttaaatgca
aatgtcagtggactaaatgaagttgcaaataacttaagcagtccactttcttcagatctc
ctaaaaggggcaagtgttggcacatcacggctttctgatgtcacaactcttgctattgga
tacatgtttatattctctttagtcttcttctatcttggtattattgctttaattcggtac
actaggggtgaacctttgactatggggagattttatggtattgcttctatagcagagaca
attccatccctcttcaggcagttcttggcagccatgagacacttgatgaccatgattaag
gttgccttccttctggttatcgaacttggggtgtttcctttgatgtgtggatggtggttg
gatgtttgtaccataaggatgtttggaaagtctatggctcaaagggttcaattcttcgtg
atttctcctttagcaagctcattagttcattgggttgtaggaattgtttacatgttacat
ataagcattttcgtgagccttcttcgtggggttttgcgtcaaggggttttgtattttctt
cgagatccagcagatcctaactacaacccgttccgtgatttaattgatgatcctgtgcac
aagcatgctcgcagagttttattgtctgttgctgtttatggaagtctaattgtgatgctt
gtattcttacccgttaaacttgctatgagaatggcaccttctatttttccactggacata
ttggtatccgacccatttactgaaattccggctgacatgcttctctttcaaatctgcatc
ccatttgccattgaacattttaagttgcggaccacaatcaagtcccttctccactactgg
tttacggcagttggctgggcacttggcttaacagatttcatactgcctggacctgaggac
agtggtgttcaagacaatggaaacgcggagcaaggaagacaggatagactacaggtagct
caactcggtggacaggatcgggctgtagtggcccttgcagccgcagatgaccaaaacagg
accactcttacagcaggaagttctgcggaggaggatgatagtgatgaacaatctgattca
gataggtacagctttgctcttcgtatcgtcctcttgctggtggtggcatggatgtcttta
cttatcttcaactccgtgttgatagttgttccgatatcacttgggcgtgctcttttcaat
gccattcctcttctgccaataactcatggcatcaagtgcaacgatctttatgcttttgta
attggaagttatgtcatttggacggctttagctggagcaagatactccattgagcaaatt
agaaccaagagggcaacagtgttgtttagccaagtatggaagtggtgtagcattgttctt
aagagcttggctcttttgtcaatatggatctttgttatcccagtgttgattgggcttctc
tttgagcttttggtaattgtgccattgcgggtgcctgtagatgaaagcccagttttcctt
ttgtatcaggattgggcattggggctcatctttcttaagatctgtactcggctggttatg
ttggaccaggtgatgccactggtggatgaaagttggcgaacgaaatttgaaagggtgaga
gaagatggtttctcaaggctgcaatgcctttgggtactgcaggagattgtgttcccaata
ataatgaagctgctaacagccttgtgcgtaccttatgtcttagcaagaggagtatttcct
gtgcttgggtaccctatggcagtaaactcagcagtgtaccgatttgcatggctgggatgt
ctctgcttcagcctgctgtgcttttgtgccaagagattccatgtctggttcaccaacctt
cacaattcaattcgtgatgatcgctatctcattggacgcaagctacataactatggggag
gatctaggagaggagcaaaatgaggcagggacttcctccgaagcacaaaattcaaattca
caggacactggtttgattcgagaagctgatgtgggaattagacaaagacgtgctaatcga
caggaagcttaa

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