Populus trichocarpa (black cottonwood): 7465030
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Entry
7465030 CDS
T01077
Name
(RefSeq) probable E3 ubiquitin ligase SUD1 isoform X1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7465030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7465030
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7465030
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
7465030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
7465030
NCBI-ProteinID:
XP_024465981
LinkDB
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Position
1:complement(31389753..31395724)
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AA seq
1103 aa
AA seq
DB search
MEIDSAVEPPPQQHPSTAEAPPESVNQTQSPSGSMGIEESYGAAAARFDDDEEEEGDVCR
ICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYSENAP
ARLPFQEFVVGMAMKTCHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFVEAQRLF
LSHISTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDAEREDDGDQNGAR
AARQQPGQANRNVAGEANAEDAGGAQGIAGGGQIIQRNVENVAARWEMQAARLEAHVEQM
FDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGAVIFVPFSLGRIILYY
ISWLFSFASVPVLSTVMPLTDTALSLANITLKNALTAVANLTSEGEDSGVLGEVADMLNA
NVSGLNEVANNLSSPLSSDLLKGASVGTSRLSDVTTLAIGYMFIFSLVFFYLGIIALIRY
TRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWL
DVCTIRMFGKSMAQRVQFFVISPLASSLVHWVVGIVYMLHISIFVSLLRGVLRQGVLYFL
RDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDI
LVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHYWFTAVGWALGLTDFILPGPED
SGVQDNGNAEQGRQDRLQVAQLGGQDRAVVALAAADDQNRTTLTAGSSAEEDDSDEQSDS
DRYSFALRIVLLLVVAWMSLLIFNSVLIVVPISLGRALFNAIPLLPITHGIKCNDLYAFV
IGSYVIWTALAGARYSIEQIRTKRATVLFSQVWKWCSIVLKSLALLSIWIFVIPVLIGLL
FELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVR
EDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPVLGYPMAVNSAVYRFAWLGC
LCFSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRKLHNYGEDLGEEQNEAGTSSEAQNSNS
QDTGLIREADVGIRQRRANRQEA
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgactccgcggtggagccaccgccacaacaacatccgagcaccgccgaagcc
ccccccgagagcgtaaaccagacacaatctccatccggttcgatggggatagaggagagt
tacggagcggcggcggcgaggtttgatgatgacgaggaagaggagggggatgtttgcagg
atatgtaggaatccaggagatgcggagaatccgttacggtatccttgcgcttgcagtggt
agtattaagtttgttcaccaggattgtctccttcagtggctcaatcatagtaatgctcgc
caatgcgaggtttgcaaacatccattttctttctctcctgtttattctgagaatgccccg
gcaaggcttccttttcaggagtttgtagtagggatggcaatgaagacttgccatgttctg
caattctttttgcgtctcagtttcgtgctttctgtctggcttctaattatacccttcata
acgttttggatatggaggttggcttttgtgaggagttttgttgaagcccagagattattc
ttaagtcatatctccactactgttattcttaccgattgtctgcatgggttcctgctttct
gcgagtattgttttcatttttcttggtgcaacttctttaagagattattttaggcattta
agagagcttggaggacaggatgctgagagagaagatgatggagaccaaaatggtgcccgt
gctgcaagacaacaaccaggacaggctaatagaaatgttgctggtgaggcaaacgctgaa
gatgctggtggagcacaaggaattgctgggggtggtcaaataatccaaaggaatgtggag
aatgttgctgctcgatgggagatgcaggcagctcgtctcgaggctcatgttgagcagatg
tttgatggtttagatgatgctgatggtgcagaggatgtgccctttgatgagcttgtgggc
atgcagggtcctgttttccatttagttgaaaatgcattcactgttttggctagcaatatg
atattccttggtgctgtaatcttcgtgccattttcattgggacggattatcctatactac
atatcatggcttttctcttttgcaagtgttcctgtgctgtcaacagtcatgcctcttact
gatactgccctctccttagcaaatatcaccttgaagaatgcattaactgctgttgcaaat
ttgacatctgaaggtgaagacagtggggttcttggtgaggttgcagacatgttaaatgca
aatgtcagtggactaaatgaagttgcaaataacttaagcagtccactttcttcagatctc
ctaaaaggggcaagtgttggcacatcacggctttctgatgtcacaactcttgctattgga
tacatgtttatattctctttagtcttcttctatcttggtattattgctttaattcggtac
actaggggtgaacctttgactatggggagattttatggtattgcttctatagcagagaca
attccatccctcttcaggcagttcttggcagccatgagacacttgatgaccatgattaag
gttgccttccttctggttatcgaacttggggtgtttcctttgatgtgtggatggtggttg
gatgtttgtaccataaggatgtttggaaagtctatggctcaaagggttcaattcttcgtg
atttctcctttagcaagctcattagttcattgggttgtaggaattgtttacatgttacat
ataagcattttcgtgagccttcttcgtggggttttgcgtcaaggggttttgtattttctt
cgagatccagcagatcctaactacaacccgttccgtgatttaattgatgatcctgtgcac
aagcatgctcgcagagttttattgtctgttgctgtttatggaagtctaattgtgatgctt
gtattcttacccgttaaacttgctatgagaatggcaccttctatttttccactggacata
ttggtatccgacccatttactgaaattccggctgacatgcttctctttcaaatctgcatc
ccatttgccattgaacattttaagttgcggaccacaatcaagtcccttctccactactgg
tttacggcagttggctgggcacttggcttaacagatttcatactgcctggacctgaggac
agtggtgttcaagacaatggaaacgcggagcaaggaagacaggatagactacaggtagct
caactcggtggacaggatcgggctgtagtggcccttgcagccgcagatgaccaaaacagg
accactcttacagcaggaagttctgcggaggaggatgatagtgatgaacaatctgattca
gataggtacagctttgctcttcgtatcgtcctcttgctggtggtggcatggatgtcttta
cttatcttcaactccgtgttgatagttgttccgatatcacttgggcgtgctcttttcaat
gccattcctcttctgccaataactcatggcatcaagtgcaacgatctttatgcttttgta
attggaagttatgtcatttggacggctttagctggagcaagatactccattgagcaaatt
agaaccaagagggcaacagtgttgtttagccaagtatggaagtggtgtagcattgttctt
aagagcttggctcttttgtcaatatggatctttgttatcccagtgttgattgggcttctc
tttgagcttttggtaattgtgccattgcgggtgcctgtagatgaaagcccagttttcctt
ttgtatcaggattgggcattggggctcatctttcttaagatctgtactcggctggttatg
ttggaccaggtgatgccactggtggatgaaagttggcgaacgaaatttgaaagggtgaga
gaagatggtttctcaaggctgcaatgcctttgggtactgcaggagattgtgttcccaata
ataatgaagctgctaacagccttgtgcgtaccttatgtcttagcaagaggagtatttcct
gtgcttgggtaccctatggcagtaaactcagcagtgtaccgatttgcatggctgggatgt
ctctgcttcagcctgctgtgcttttgtgccaagagattccatgtctggttcaccaacctt
cacaattcaattcgtgatgatcgctatctcattggacgcaagctacataactatggggag
gatctaggagaggagcaaaatgaggcagggacttcctccgaagcacaaaattcaaattca
caggacactggtttgattcgagaagctgatgtgggaattagacaaagacgtgctaatcga
caggaagcttaa
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