Populus trichocarpa (black cottonwood): 7466761
Help
Entry
7466761 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 20 homolog 2
KO
K12195
charged multivesicular body protein 6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03250
Viral life cycle - HIV-1
pop04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
7466761
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
7466761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7466761
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7466761
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
7466761
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
7466761
Exosomal proteins of other body fluids (saliva and urine)
7466761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Snf7
TINF2_N
HTH_ParB
IL34
Motif
Other DBs
NCBI-GeneID:
7466761
NCBI-ProteinID:
XP_052310350
LinkDB
All DBs
Position
7:12554454..12557680
Genome browser
AA seq
222 aa
AA seq
DB search
MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLETVIEAEKLAAKDLIREKRKDRALL
ALKKKKTQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGTDAIKAIQSEVNLDD
VQKLMDDTAEAKAYQDEINAILGEKLSAEDEEEILAEFEDLETQVAVQDLPEVPTIVVSE
EQEQKLDLPDVPTKPPVLVDDAEISSAEVPTKRKVLEEPLPA
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttatttgtgaagaaaccgaagataacagatgttgatcgagccattctctct
ctcaagactcaaagacgcaagcttgcccaatatcaacaacagcttgaaactgtgattgaa
gcggaaaagctagctgctaaagatttgattcgtgagaagagaaaggacagggcattgtta
gcgttgaagaagaagaaaacacaagaagaattgctgaagcaagtggatacgtggctcatt
aatgtcgaacaacaattggcagatattgagctggccagcaagcagaaagctgtatttgag
agtttgaagtcaggtactgatgcaatcaaggcgatacaaagtgaggtcaatctggatgat
gttcagaagctaatggatgataccgctgaagctaaagcttaccaagatgaaattaatgct
atcctgggggaaaaactatcagcagaagatgaagaggagattttagctgaatttgaggac
ttggaaactcaggtggctgttcaagacttgccagaagtgcccactatagttgtgtctgag
gaacaggagcagaagttggaccttcctgatgtaccaaccaaaccacctgtgctggtggat
gatgctgaaatttcttcagctgaggtccccactaagagaaaagttttggaggaaccattg
ccagcatga
DBGET
integrated database retrieval system