KEGG   Populus trichocarpa (black cottonwood): 7466761
Entry
7466761           CDS       T01077                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 20 homolog 2
  KO
K12195  charged multivesicular body protein 6
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03250  Viral life cycle - HIV-1
pop04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    7466761
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    7466761
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7466761
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7466761
Membrane trafficking [BR:pop04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    7466761
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   7466761
  Exosomal proteins of other body fluids (saliva and urine)
   7466761
SSDB
Motif
Pfam: Snf7 TINF2_N HTH_ParB IL34
Other DBs
NCBI-GeneID: 7466761
NCBI-ProteinID: XP_052310350
LinkDB
Position
7:12554454..12557680
AA seq 222 aa
MGNLFVKKPKITDVDRAILSLKTQRRKLAQYQQQLETVIEAEKLAAKDLIREKRKDRALL
ALKKKKTQEELLKQVDTWLINVEQQLADIELASKQKAVFESLKSGTDAIKAIQSEVNLDD
VQKLMDDTAEAKAYQDEINAILGEKLSAEDEEEILAEFEDLETQVAVQDLPEVPTIVVSE
EQEQKLDLPDVPTKPPVLVDDAEISSAEVPTKRKVLEEPLPA
NT seq 669 nt   +upstreamnt  +downstreamnt
atgggaaatttatttgtgaagaaaccgaagataacagatgttgatcgagccattctctct
ctcaagactcaaagacgcaagcttgcccaatatcaacaacagcttgaaactgtgattgaa
gcggaaaagctagctgctaaagatttgattcgtgagaagagaaaggacagggcattgtta
gcgttgaagaagaagaaaacacaagaagaattgctgaagcaagtggatacgtggctcatt
aatgtcgaacaacaattggcagatattgagctggccagcaagcagaaagctgtatttgag
agtttgaagtcaggtactgatgcaatcaaggcgatacaaagtgaggtcaatctggatgat
gttcagaagctaatggatgataccgctgaagctaaagcttaccaagatgaaattaatgct
atcctgggggaaaaactatcagcagaagatgaagaggagattttagctgaatttgaggac
ttggaaactcaggtggctgttcaagacttgccagaagtgcccactatagttgtgtctgag
gaacaggagcagaagttggaccttcctgatgtaccaaccaaaccacctgtgctggtggat
gatgctgaaatttcttcagctgaggtccccactaagagaaaagttttggaggaaccattg
ccagcatga

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