Populus trichocarpa (black cottonwood): 7469383
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Entry
7469383 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7469383
KO
K10756
replication factor C subunit 3/5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7469383
03410 Base excision repair
7469383
03420 Nucleotide excision repair
7469383
03430 Mismatch repair
7469383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7469383
03036 Chromosome and associated proteins [BR:
pop03036
]
7469383
03400 DNA repair and recombination proteins [BR:
pop03400
]
7469383
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
7469383
DNA Replication Termination Factors
ELG1-RFC complex
7469383
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
7469383
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
7469383
Check point factors
HRAD17(Rad24)-RFC complex
7469383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DUF3641
RsgA_GTPase
Ribosomal_L14
T2SSE
AAA_30
Motif
Other DBs
NCBI-GeneID:
7469383
NCBI-ProteinID:
XP_024440797
LinkDB
All DBs
Position
14:13534476..13538335
Genome browser
AA seq
682 aa
AA seq
DB search
MPPSPAIPQSTSDPYLSCTSSPSKAAPRLPPSNQSAYSNHSSKSSYWQAWSNIGKLGTFI
LPERKSTDWSSRHSNLTEESLEAHNRRQEAINILHDKNAKCSPYYKGLVDYSLIISRERH
HLPTPPTSPCRESHATAVTSSSLSTFIFKMQEWSSCFSISSKSNNVKGKENNAPAAVIAT
STDKIKPMKPRPAAPSHSASSFSSQTSGRTTLEKETRDVNALRVVTEEKPLRERVSESKP
PAAAPSLTNDDHRDILDCPSTHDVMNIDRKFTLANKYQPKALKDFICNRDQAIRMQGVMR
DFDCNHFIFEGPAGVGKRTMIRAMLQEAFGQERVQAREECKSFNLKGEQIGSIQVRVKVS
SQHVEVNLSDLKGYEKQVIVELIKETHNNHNKRIISNNPINPKSRLDDCRAIILYEADML
STDALLYIKWVLERYKGFSKFFFCCNDVSRLQPIRSLCTVVQLLPPSKREVVQVLEFIAE
QEAIELPYPLAEKIADKSKNNLRQAIRSFEASWHGSYPFTEDQEILTGWEDDIANIAKDM
VEEQSPKQLYIIRGKLQNLIEHDVSPDFFFESLLGELKKHLDEPFQLQLDGLHKDYNRND
GNMLEISENELIFLRSRHEEAGKRLHDPARKNADHLFVRIEEFIAKFMSFYKISVTNNKS
IQHDDDHEGASLISLSHTHSEI
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgagtccagcaatccctcagtccacttccgatccctacctgtcatgtacatca
tcaccatccaaagccgccccccgtctacctccgtccaaccaatctgcgtactctaatcac
tcctccaagtcgtcctactggcaagcttggagtaacatcggcaaactaggcaccttcatc
ctcccagaaaggaagagcacagattggtcatccaggcactccaacttaaccgaggagagt
ctcgaggcacataatagaagacaagaagccattaacatcctccatgacaagaacgcaaaa
tgcagtccctattacaagggcctcgtcgattattccctcatcatcagccgcgagagacat
catttgccaacacccccaaccagtccctgccgtgaaagccatgccacagccgtcacttcc
tcttctctttcaactttcatctttaagatgcaagagtggagttcttgcttttcgatttcc
tctaaatctaacaacgtcaagggcaaggagaacaatgccccggctgcagtaattgctacc
agcactgacaaaattaaacctatgaagccaagacctgcagctcccagtcattctgcctcc
tccttctcttctcaaacatcaggcaggacgaccttagagaaggagacgcgtgacgttaat
gccttacgagttgttactgaagagaagccattgagggagagagtatcagaatcaaaacca
cctgctgcagcaccatctctaacaaatgatgatcatcgtgacatactggactgtccaagt
actcatgacgtgatgaatattgacaggaagtttacgttggcaaacaagtaccagcccaaa
gccttgaaagatttcatctgcaatcgagatcaagccattaggatgcagggtgtcatgagg
gactttgattgcaaccatttcatatttgaaggacctgcaggcgttggaaagagaaccatg
ataagggccatgcttcaggaagcctttggacaggagagagtgcaggcgagggaagaatgc
aagtcattcaacttgaagggggaacagattggaagtatacaggtaagagtgaaggtatcc
tcccaacacgtagaagtcaatctctctgatctcaaaggctatgaaaagcaagtcattgtt
gagctcatcaaggaaacacataataatcataataagaggattatttccaacaaccctatt
aatccaaagtcaagacttgatgactgccgagcaattattttgtacgaggcagacatgcta
tctacagatgccctcctctatattaagtgggtgctggagaggtataaaggattcagtaaa
tttttcttctgctgcaacgatgtctcaaggcttcaaccaattagatcactttgcactgtt
gtccagcttttgccaccttcaaaaagagaggttgttcaagttttggaattcatagctgaa
caagaagccatagaattgccatatccattggctgaaaagattgctgacaaatctaagaac
aaccttcgtcaagccatccgatcatttgaagcctcctggcacggaagttatcccttcaca
gaagatcaagaaatcctgactggatgggaagatgatattgcaaatatcgccaaggatatg
gttgaagagcaaagcccaaaacagctgtatatcatccgtgggaagcttcaaaatctgata
gagcatgatgtatctcctgatttctttttcgagtcccttcttggagaactgaagaagcat
ttggatgagccatttcagctccaactcgacggtctacataaggactacaatagaaatgat
ggaaacatgttagagatcagtgagaacgaactgatatttctgcgcagtcgacatgaggag
gctggtaaaaggcttcatgatccggcaaggaaaaatgctgatcacctttttgtgaggatt
gaagagttcatagcaaaatttatgagcttctacaagatatcagtcacgaataacaaaagc
attcagcatgatgatgaccatgaaggagcttcattaatctctctctctcacacacacagt
gagatatga
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