Populus trichocarpa (black cottonwood): 7490489
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Entry
7490489 CDS
T01077
Name
(RefSeq) protein TRANSPARENT TESTA 9 isoform X1
KO
K19513
protein CLEC16A
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7490489
03029 Mitochondrial biogenesis [BR:
pop03029
]
7490489
Membrane trafficking [BR:
pop04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
7490489
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
7490489
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FPL
CLEC16A_C
Motif
Other DBs
NCBI-GeneID:
7490489
NCBI-ProteinID:
XP_024446439
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Position
18:14579495..14587235
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AA seq
861 aa
AA seq
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MWSSFWRSRDRFSLDELRYLIDQLQKVQIVNDVNKDFVIEALRSISELITYGDQHDSNYF
EFFMERQVMGEFVRILKVSRTVSVSRQLLQTMSIMIQNLKSEHAIYYLFSNEHINFLITY
AFDFKNEELLSYYISFLRAISVKLDKNTISLFVKTQNEEVVSFPLYVEAIRFAFHEENMI
RTAVRALALNVYHVGDESVNRFVVKAPRADYFSNLLTYFRKQCIDLNGLVSETLKNPDSD
TTTAILAAVDEIEDDLYYISDVISAGIPDVGRLITDKIMQLLILPLLLPSLQLDAANDIQ
IGAITSLYLLCCILRIVKIKDLANTIAAALFCSPEAFIADSETKLNGYVPDHVHEIQQPE
NENVIEVNGCSKQIMQSLSSSSQVRTEDIISKGVSHSTLRDALLSYITVGDDLQVLGSLS
MLATLLQTKVELDEIMLDALGILPQRKQHKKLLLQALVGEDSREDQLFSLGSSSIRDEFN
CELDGYLQTLKDQYGVACSSLEVGTTPSAHRFQVLHTLVSLFCRSNISPETLWDGGWLFR
QLLPYSEAEFNSQHLKLLKTSHTQDSYKNCTCALLEETRGTWPDLLVSILRDEWKKCKRA
MEASSPPKEPKCILFPLEKSSADDVLPSESSIIAGEKMCKVVKVFVLLHQLHIFSLGRAL
PDQPPTCLPSDIPENSRARTAGLDASGPKLGAELRLVDAVPCRIAFERGKERHFCFLAIS
VGTSGWILLAEELPLKKHYGIIRIVAPLAGSNPAIDEKHSRWLHLRIRPSTLPVLDPAKS
ITHGKAKTKALVDGRWTLAFRDDESCKTALSMIIEEFDLQSSEVKRRLNSLLNIEGGIDV
PDSSLHPSEASSSTQTPSNSS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtggtcttccttttggagatccagagatcgtttctccttagatgaactcagatattta
attgatcagctgcaaaaagttcaaattgtaaatgatgttaataaggactttgtaatagag
gcgttgagatcgatatcggaattaataacgtacggagaccagcatgattcaaactatttt
gagttttttatggaaaggcaagtaatgggagagtttgtgaggatactaaaggttagtaga
actgtttcagtttcacgtcagttgctgcaaacgatgagcatcatgattcagaatttaaaa
tccgagcacgcaatatattatttgttcagtaatgagcatattaattttttgataacttat
gcatttgattttaagaatgaggagttgttgtcttactacatttctttcttgagggcaatt
agtgtgaagcttgacaagaacacaatttctttgttcgtgaagacgcaaaatgaagaagtt
gtttcatttccactgtatgttgaggctatacggtttgctttccatgaagagaatatgatc
cgtactgcagtccgtgctctggcactcaatgtctatcatgttggagatgaatctgtgaat
agatttgttgtgaaggcccctcgtgctgattatttttcaaacttgcttacttatttccgg
aagcagtgcatcgatctaaatggattggtctctgaaactctaaaaaatccagactcagat
acaaccactgcgattcttgctgctgtggatgaaatagaggatgatctctactatattagt
gatgttatttctgcagggattcctgatgttgggagattaataacagacaaaattatgcaa
cttttgattcttcctttgcttcttccatctttgcagttggatgctgctaatgatattcag
attggcgctatcacttctctatatttgctctgttgcatcttacgcatagttaaaatcaaa
gatttggcaaataccattgctgctgctcttttctgttcaccggaggctttcattgcagat
tctgaaactaaactcaatggttatgtgcctgatcatgtgcatgaaatccagcagccagaa
aatgagaatgtgattgaggtaaatggatgttcaaaacagatcatgcagagcttgtctagt
tcttcccaagttcgtactgaagatattatctcaaaaggtgtttctcattcaactttgagg
gatgctttgctttcatatattacagttggagatgatcttcaagttctgggttctttgagc
atgctggctacgttgttgcaaacaaaagtagaattagatgaaataatgctagatgctctt
ggaattctcccccagcgcaagcaacacaagaaactcttactgcaagcattggttggcgag
gactcacgggaagatcaacttttttcgctaggaagcagctctataagagatgaatttaat
tgtgagcttgatggctatctacaaactctaaaggatcagtatggagtagcatgctcttct
ctggaggtgggaacaaccccctctgcacatagatttcaggtactccacacattggttagt
cttttttgccgttcaaatatatctccggagacattgtgggatggtggttggctttttcgt
cagctacttccttatagtgaggcagaattcaatagccagcatcttaaattactgaaaact
tctcatacacaggattcttataagaattgcacatgtgctcttcttgaggagaccagaggt
acatggcctgatctacttgtgtccatcttacgtgatgaatggaaaaagtgcaaaagagca
atggaagcttcgtctcctccgaaagagccaaagtgcatactctttccattagagaagtcc
tctgctgatgatgttcttcccagtgaatcatcaattattgctggtgaaaaaatgtgcaag
gtggtgaaggtgtttgtacttcttcatcaacttcacattttctccctaggtagagcttta
cctgaccagcctcctacttgtcttccaagtgatatccctgaaaattcccgtgcaagaact
gctggcctggacgcttcaggtccaaaactaggcgccgagttgagactagttgatgccgtg
ccttgtaggattgcatttgagaggggtaaagaacgccatttttgctttttagcaatctct
gtgggcacatctgggtggatcctacttgcagaagaattacccttgaagaagcattatgga
atcatccgtattgtcgctcctctggcaggttccaatcctgcaattgatgagaagcattca
agatggttacacttgcggatccgtccatctactttgcctgttttggatcctgctaaatcc
attactcatgggaaggctaagacaaaagccctggttgatgggagatggaccttagcattc
agggatgacgaatcttgcaagactgcgttgtcgatgattattgaggagtttgatctgcaa
agcagtgaagtcaagagaagactaaattcattgctcaacattgaaggaggtatagatgtt
ccagacagttctctacatccttctgaggcttcctcatcaactcaaacaccttccaattca
tcgtaa
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