KEGG   Populus trichocarpa (black cottonwood): 7496997
Entry
7496997           CDS       T01077                                 
Name
(RefSeq) lysine-specific demethylase JMJ28 isoform X1
  KO
K15601  [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7496997
Enzymes [BR:pop01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.65  [histone H3]-dimethyl-L-lysine9 demethylase
     7496997
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    7496997
SSDB
Motif
Pfam: WRC JmjC zf-4CXXC_R1
Other DBs
NCBI-GeneID: 7496997
NCBI-ProteinID: XP_024437230
LinkDB
Position
11:3208006..3216306
AA seq 1017 aa
MEALPDHLRCKRTDGRQWRCNRRVMEDKKLCEIHHLQGRHRQYRRKVPENLKLQRKKSKK
SATSSSNAETLIRVSSKEGKLGKFKKKGKKLKRGDLQLDLIRMVLQKEMEKRKSKKRKSF
SEKVSVDNGDDNDNVNDCSESEEGEGEELMRNLPNGFMAISPAKSFGNGNVGCSSSHCDI
KIGGDVFNGASTARRCFRSKNVEPMPIGKLQVLPYKRDGVRLRKGKRKKCHWCRSSTRTL
IRCSSCRKEYYCLDCIKEQYLETQEEVRRECPMCRGTCSCKVCSAIQCRDIACKDLSKEK
SEVDNVLHFHYLICMLLPILKQINQDQSIELEIEAKIKGQKPSEVQIQQAEVSCNKQCCC
NNCKTSIVDFHRSCPECSYNLCLSCCRDIFHGGVHGGVKTLLCKCPNGRKACIPGKQLSE
MKSLCATKQSYGSKYLGSTFSPCRSAVDRNGGIPCPSRKFGGCGGSLLDLSCIFPLCWTK
DLEVNAEELVGCYELPETLDVRSCCSLCVGMDCESNGIEQLQEAAAREDSGDNLLYYPTI
IDVRSDNLEHFQKHWGRGQPVIVRNVLQSTSDLSWDPIVMFCNYLKNNAARSQNGQATDC
SDWFEVEIGIRQMFMGSFKGLTNANIWHEKLKLKGLLSSYLFQEHFPVHYSHVLQALPLP
EYMDPISGVLNIAADLGQETSKSDLGPCLYISYGSGENLSQADSVTKLRYNSYDVVNILA
HATDVPVSTKQLNYIRKLMTKHKDQNKQSGEAPLDEENIEVELHDMFREDMQVNKKVARV
SWFSAARHETHASNLKDRDVFHDGDSGSDSDSDSDSHTDTDTEVSKFFFGPVKSSRSSDN
LKFHGNHSETSNHFISESCGAQWDVFRKQDVPKLVEYLRRHSNEFTHTYGFQKHMVHPIL
DQNFFLDAYHKMRLKEEFKIEPWSFDQHVGEAVIVPAGCPYQIRNLKSCVSVVLDFLSPE
NVTECIQLMDELRQLPENHKAKVDSLEVKKMALHSISRAVRKIHELTRAETSMDLNG
NT seq 3054 nt   +upstreamnt  +downstreamnt
atggaggcactaccggaccacctccgttgcaagagaacagacggccggcaatggcggtgc
aaccggcgggtgatggaggataagaagctctgtgaaattcaccaccttcaaggccgccat
aggcagtatagaaggaaagttccagagaatttgaaattgcagagaaagaagagcaagaaa
tcagcaacatcaagttctaatgctgaaaccctaattagggtttcttcaaaagaggggaaa
ttagggaaatttaagaagaaaggaaagaaattgaagagaggggatttacagttggatttg
attaggatggttttacagaaagaaatggagaagaggaagagtaagaaaaggaaaagtttt
tcagagaaagtaagtgttgataatggtgatgataatgataatgtgaatgactgcagtgag
agtgaagaaggagaaggagaagagttaatgagaaatttgccaaatgggttcatggcaata
tcacctgctaagagttttgggaatggcaatgtgggttgttctagttcacattgtgatatt
aagattggaggagatgtttttaacggggctagtactgctagaagatgttttaggtctaaa
aatgttgagccaatgccaattgggaaattgcaggttttgccgtataagagggatggagtg
agattgaggaaggggaagaggaagaagtgccactggtgtaggagtagtacgaggacattg
attaggtgttcgagttgtcggaaagagtattattgtttggattgcatcaaagagcagtat
ttggaaacacaagaagaagttaggagggaatgtcctatgtgtcgtggaacttgcagctgt
aaggtctgctcagcgattcaatgtagggacattgcatgtaaggacttgtccaaggagaaa
agtgaagtagacaacgttttacattttcattatttgatttgcatgcttcttcccatactg
aaacaaataaatcaagatcagagcattgagctagaaatagaggcgaaaataaaaggccag
aagccttctgaagttcaaatccagcaggctgaagtcagctgcaataagcaatgttgctgc
aataactgcaagacttccatagtggatttccataggagctgtcctgagtgttcctataac
ctttgcttaagttgttgtcgggatatttttcatgggggcgtacatggaggtgttaaaact
cttttatgcaaatgtccaaatggaaggaaagcttgtatacctggcaaacaactttcggaa
atgaaatcactttgtgccacaaagcagagttacggcagcaaatatcttggttcgacattc
tcaccttgtcggagtgctgtggatcgtaatggtggtataccttgtccctctagaaagttt
ggaggttgtggtggtagcctacttgatttgagttgcattttccccttatgttggacaaaa
gatctggaagtaaatgcagaagaattagttggctgctatgagttaccagaaaccttggat
gttcgatcatgttgctcattatgtgttgggatggattgtgaatctaacgggattgaacag
ctgcaagaagcagctgcaagagaagattctggtgataaccttttatattatccaaccatc
attgatgttcgcagtgataacctagaacactttcagaagcactggggcagaggtcagcct
gtgatagttcgtaatgtgcttcagagtacatctgatttgagttgggatccaatagtcatg
ttctgcaattatcttaagaataatgctgccagatctcaaaatgggcaagctacagattgc
tcggactggtttgaggtagaaattggtataagacagatgtttatggggtcttttaagggc
ctgacgaatgccaacatatggcatgagaagctgaaattgaagggtttgctttcttcttat
ttattccaagaacattttccagttcattatagtcacgtccttcaggctctaccacttcca
gaatacatggaccccatttcaggtgttctaaacattgctgcagatttggggcaggaaacc
tcaaagtctgatctgggtccttgtctttatatctcatatggaagtggtgagaatctttca
caggctgattctgtgacaaaactgcgttataattcatatgatgtggttaatattttggca
catgctactgatgtccctgtatctacaaaacagcttaattacataagaaagttaatgaca
aagcacaaggaccagaataaacagagcggagaagcacctttagatgaggaaaacattgaa
gtggaattgcatgatatgttcagagaagatatgcaagtaaacaagaaagttgctagagta
tcctggttctctgctgcaagacatgaaactcatgcttcaaatctgaaagatagagacgtg
ttccatgatggggattctggttctgattctgattctgattctgattctcacactgatact
gatactgaagtctcaaaatttttctttggacctgttaaaagttcaaggtcatcagataat
cttaagtttcatgggaatcactcggagacttccaatcatttcatttccgagtcttgtggt
gcccaatgggatgtctttcgtaaacaggatgttcccaagcttgtagaataccttagaagg
cactctaatgagttcactcacacatacggcttccaaaagcatatggttcatccaatactt
gatcagaatttctttcttgatgcatatcataaaatgagactgaaggaggagttcaaaatt
gaaccctggagttttgatcaacatgttggagaagcagtgattgttcctgctggatgccca
taccaaattagaaatcttaagtcatgcgtcagcgtggttctggacttcctctcgccagaa
aatgttactgaatgcattcagttgatggatgaattacgacaacttccagagaaccataag
gccaaagttgacagtttagaggtgaagaaaatggcattgcacagtatcagtagagcagtc
agaaaaattcatgagcttacaagggcagagaccagcatggacctcaatggctaa

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