KEGG   Pseudomonas oryzihabitans: APT59_10325Help
Entry
APT59_10325       CDS       T04267                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
por  Pseudomonas oryzihabitans
Pathway
por03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:por00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    APT59_10325 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:por03400]
    APT59_10325 (ligD)
Enzymes [BR:por01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     APT59_10325 (ligD)
DNA repair and recombination proteins [BR:por03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     APT59_10325 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ALZ84571
UniProt: A0A0U4VN59
LinkDB All DBs
Position
complement(2220555..2223131)
Genome map
AA seq 858 aa AA seqDB search
MASSSSEYNRKRNFDITAEPRDEDSPRRRKAKGALSFVIQKHDARRLHYDFRLELDGTLK
SWAVPKGPSLDPGEKRLAVQVEDHPIAYGGFEGSIPEGQYGAGDVIVWDRGEWQADGDPA
QAYAAGKLKFELRGEKLRGHWTLVRTRLRGHSDKPQWLLIKERDDQARETAEYDITVEAP
DSVLSDKTLPRLAKGTKAKEAKASTQAASPKAPARKTTAKARKADLPATLEAQLATLVDS
PPAGDWLYEVKYDGYRLLAHIEGSAVSLFTRSGNDWTERLPDQAKALAALGLDNAWLDGE
IVVNDAHGVSSFQALQNAFETGKDSRIAYYLFDLPYLNGADLREVPVEQRRELLGKLLEN
SNESDLLRFSAAFEVPADRILASACELGLEGVIGKRLGSPYRSRRNKDWIKLKCAHRQEF
IIVGYTPPKGGRQHLGALLVALHDEQGALHYAGKVGTGFTAAMLKQLHARFQPLMVERPP
VVDPPKGAAYREVTWLKPEQLCEIAYAEMTQDRIVRQGVFHGLREDKPAQEIGLEEAAPA
REAERSGPSSSSSRKSSRTSKDATVAGVRISHPERVIDEASGATKLDVARYYEAVADWML
PHLADRPVALVRTPEGIAGEQIFQKHKQTLAIPHIRELDTALDPGHAPLMVIDSRDALIG
AAQMGSVEFHTWNATADRIDRPDRFILDLDPDPALPWSRMVEATELVLTLLDELGLQAFV
KTSGGRGLHLVVPLDRRQDWETVKGFAQAAAQHLATTLPKLFAAKMGAQNRQGRIFVDYL
RNRHGATTVSAFSLRARPHLGVSVPIARDELSTLQASDQWRLDTLMQRLEGLKDDPWAGY
AKVRQGLTRARRERLGAD
NT seq 2577 nt NT seq  +upstreamnt  +downstreamnt
atggccagttcgtctagcgaatacaaccgcaagcgcaacttcgatatcaccgccgagccg
cgtgacgaggacagcccgcgtcggcgcaaggccaagggtgccctgagcttcgttatccag
aagcacgatgcgcgccgcctgcactatgacttccgcctggaactggacggtacgctcaag
agttgggcggtgcccaagggccccagtctggacccgggtgaaaagcgcttggcggtccag
gtggaggaccatccgatcgcctacggtggcttcgagggcagcattcccgaaggccagtac
ggcgcgggcgacgtcatcgtctgggatcgcggcgaatggcaggccgacggcgacccggcg
caagcctatgccgctggcaagctcaagttcgagctcaggggcgaaaagctccgtggccac
tggaccctggtacgcacccgcttgcggggccatagcgacaagccccagtggctgctgatc
aaggagcgtgacgatcaggcacgggaaaccgccgagtacgacatcacggtggaggcgcct
gacagcgtactgagcgacaagactctgccgcgcctggccaagggtaccaaggccaaggaa
gccaaggcttccacccaagcggcaagtcccaaggcgccagcgcgcaagaccaccgccaag
gctcggaaggccgacctgccggcgacgctggaggcccagctggcgactctggtcgacagc
ccaccggcgggagactggctgtacgaggtgaaatacgacggctatcgtctgctcgcccat
atcgagggcagcgcggtcagtctgttcacccgcagcggtaacgactggaccgagcgccta
ccggaccaggccaaggccctcgccgcccttggcctcgacaatgcctggctggacggcgag
atcgtggtcaacgacgcccatggggtctccagcttccaggcgctgcagaatgccttcgag
accggcaaggacagccgtatcgcctattacctcttcgacctgccctatctcaacggcgcg
gatttgcgcgaggtcccggtcgagcaacgccgtgagctgctgggcaaactgctagagaac
agcaacgagagcgacctgctgcgcttttccgccgccttcgaggtaccggccgatcgcatc
ctggccagcgcctgcgaactcggtctggagggcgtgatcggcaagcgcctcggcagcccc
tatcgctcccgccgcaacaaggactggatcaagctcaagtgtgcccatcgccaggaattc
atcatcgtcggctataccccacccaaagggggtcgccagcacctgggcgccctcctggta
gcgctgcatgatgagcagggagcgctgcactatgccggcaaggtcggcaccggattcacc
gcggcgatgctcaagcagctgcacgccagattccagccgctgatggtagaacggccaccg
gtggtggatccgcccaagggcgccgcctatcgcgaggtgacctggctgaagccggaacag
ctgtgcgagatcgcctatgccgagatgacccaggatcgcatcgtccgtcagggcgtcttc
cacggtttgcgcgaggacaagccagcccaggagatcggcctggaagaagcggcaccagcg
cgcgaagctgaacgatccggcccttcatcctcctctagccgaaaatcctcgcgcacgtcc
aaggatgccaccgtagctggcgtgcgtatcagccatccggagcgagtgatcgacgaggcc
agcggcgcgacgaagctagacgtcgcccgttactacgaagccgtggcggactggatgctg
ccccatctggccgatcgccccgtagcgctggtgcgtacccccgaaggcatcgccggcgag
cagatcttccagaagcacaagcagaccctggccattccccacatccgcgaactggatacg
gcgctcgatcccggtcatgcgccgttgatggtcatcgacagccgcgatgccctcatcggt
gccgcccagatgggtagcgtggaattccacacctggaacgccaccgccgaccgcatcgac
cgacccgaccgcttcatcctcgatctcgaccctgatcccgccctgccctggtcacgcatg
gtggaggcgacggagttggtgctcaccctcctcgacgagctggggctgcaggccttcgtc
aagaccagcggcggtcgcggcctgcacctggtggtccccctggatcgccggcaggactgg
gaaacggtcaagggcttcgcccaggccgcggcgcagcacctggccactaccctgcccaag
ctctttgccgccaagatgggagcgcagaatcggcagggccggatcttcgtcgactacctg
cgcaaccgccatggcgccaccacggtcagcgccttttccctgcgcgcccggccgcacctc
ggcgtttcggtacccattgcccgcgacgagctgtcgaccctccaggccagcgaccaatgg
cgcctcgataccctgatgcagcgcctcgaagggctcaaggacgacccttgggcaggatat
gcgaaggtgcgccaggggctgacccgggcgcggcgcgaacgtttgggcgcagattag

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