Polaromonas sp. SP1: DT070_12615
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Entry
DT070_12615 CDS
T05689
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pos
Polaromonas sp. SP1
Pathway
pos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DT070_12615 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pos03019
]
DT070_12615 (pcnB)
Enzymes [BR:
pos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
DT070_12615 (pcnB)
Messenger RNA biogenesis [BR:
pos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DT070_12615 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AYQ28795
LinkDB
All DBs
Position
2673338..2674963
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AA seq
541 aa
AA seq
DB search
MIKKFIDKLFGKSDSTEPGAKRVKKSPFGQRQDVTVKEHGIDVSLVDDRAMDVVRTLKDA
GYEAYIVGGAVRDLLVGLRPKDFDVATDATPEQVKSLFRRAFIIGRRFRIVHVIYGRGRE
HEVIEVSTFRAHLDSSLAEQVGGNERTSKSELAGMKHAVDASGRVLRDNVWGPIEQDAAR
RDFTINAMYYDPETQVVVDYHNGIKDAKKKIIRMIGDPAVRYREDPVRIIRAVRFAAKLS
ALGFKFEDKTVAPLREMKGLLADVPQSRLFDEMLKLLQTGHALASIAQLKFLGLGTGIYP
LLDVVVENADEPFLKLALQDTDRRVGEGKPVAPSFLLSCVLWFDVREGWERRKKRGEHLM
PALQDAIDDAFNAKIGDVSGRGKLGTDMREIWTMQPRFEKRVGSAPYSLLDQPRFRAGFD
FLRLRAQTGEIEMELAEWWEKFSTAYDDERHAMIEEARQAQQNKPQAPRVRVKRPDAEPG
SANAERTTPDAADASGEQGDAAPAKKRRRRRKPANRGGAGGAEGAGGEAAASPSSDSTHN
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaaaaatttatcgacaagctgttcggcaaatcagacagcacggagcccggcgcc
aagcgggtcaaaaaatcacctttcggccagcgccaggatgtcaccgtcaaggaacacggc
attgacgtctcattggtggacgaccgcgccatggacgtggtgcgcaccctgaaagacgcc
ggctacgaggcttatatcgtcggcggcgcggtgcgcgacctgctggtcggcctgcgcccc
aaggattttgacgtcgccaccgacgccacgcccgagcaggtcaagtcgctgttccgccgc
gccttcatcatcggccggcgctttcgcatcgtgcacgtcatctacggccgcggccgcgaa
catgaagtgatcgaagtttcgaccttccgcgcccacctcgacagcagcctggccgagcag
gtcggcggcaacgagcgcaccagcaagagcgaactggccggcatgaagcatgcggtcgat
gcctccggccgtgtgctgcgcgacaacgtctggggcccgatcgagcaggacgccgcgcgc
cgcgacttcactatcaacgcgatgtactacgaccccgagacgcaggtcgtggtcgactat
cacaacggcatcaaggacgccaagaaaaagatcatccgcatgatcggcgacccggccgtg
cgctaccgcgaagacccggtgcgcatcatccgcgccgtgcgttttgccgccaagctcagc
gcgctcggcttcaagtttgaagacaagaccgtggcgccgctgcgcgagatgaagggcctg
ttggccgacgtgccgcagtcgcgcctctttgacgaaatgctcaagctgctgcagaccggc
catgcgctggccagcatcgcgcagctcaagttcctcggcctgggcaccggcatctatccg
cttctggatgtggtggtggaaaacgccgacgagcccttcctgaagctggccttgcaagac
accgaccgacgcgtcggcgaaggcaagccggtggcgcccagctttttgctgtcgtgcgtg
ctgtggtttgacgtgcgcgaaggctgggagcgacgcaagaagcgtggcgagcacctcatg
cccgcgctgcaggacgcgatcgacgacgccttcaacgccaagatcggcgacgtgtcgggc
cgcggcaagctcggcaccgacatgcgggagatctggaccatgcagccgcgctttgaaaaa
cgcgtgggtagcgcgccgtattccctgctcgaccagccccgctttcgcgcgggctttgac
ttcctgcgcctgcgcgcgcagaccggcgagatcgagatggaactcgccgagtggtgggaa
aagttcagcacggcctatgacgacgagcgccacgccatgattgaagaggcgcgccaggcc
cagcagaacaaaccgcaggcgccgcgggttcgcgtcaagcgcccggatgccgagccaggt
tcagcgaatgccgaacgcaccacgcccgatgcggcggatgcgtccggcgagcagggcgat
gccgcccccgccaaaaaacgccgtcgccgccgcaagccggccaatcgcggtggcgcaggt
ggtgccgaaggcgcgggtggcgaggctgcagcttcgccttcatcggacagcactcacaac
tcctga
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