KEGG   Polaromonas sp. SP1: DT070_17835Help
Entry
DT070_17835       CDS       T05689                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pos  Polaromonas sp. SP1
Pathway
pos03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DT070_17835 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pos03400]
    DT070_17835 (ligD)
Enzymes [BR:pos01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DT070_17835 (ligD)
DNA repair and recombination proteins [BR:pos03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DT070_17835 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AYQ29709
UniProt: A0A3G3GEZ2
LinkDB All DBs
Position
3754257..3756881
Genome map
AA seq 874 aa AA seqDB search
MAARDLLKDYRAKRDFKRTPEPAHGGARADKALTFVIQKHDARNLHYDFRLELQGTLKSW
AVPKGPSLDPSVKRMGVHVEDHPLSYAAFEGSIPAKQYGAGDVIVWDRGLWTPLGDPVKG
LKSGKLKFELHGEKLKGGWTLVRMHGRGGDRQEPWLLIKEHDEHARSEKEFDVLKALPDS
VLSGNPLPGKTGKTGKTPAKKTQSKESRVKAPAKKAADDIPEGATKAKLPETLAPQLATL
VTRPPADPEGWVYEIKYDGYRMLARIEGRSVKLFTRNGNDWTTKLPKLAKAVAALDLPSG
WIDGEIVVMNEQGVPDFGALQNAFDRASTANILYYVFDLPFFDGLDLRELPLTQRREVLC
TLVTRHPQGSIRFSDAFDQAPQDLLDSARRVGLEGVIGKRADSAYVSRRSPNWIKLKTQL
RQEFVIGGYTAPKGSRTGLGALMLGVHDEHGKLQYAGNVGTGFNDKTLDSLTARLQKLHA
DRSPFAKLPAGVKGQWVKPRLLAEVAFGEWTHGGLIRHSVFQGLRTDKPATHIIREKPAA
LAAGKGAAMPLAKKTPAAKPAAKTAAKPVPAALKSLRVTHADRVIDASTGLTKQDVVEHY
AGVAALMLPHLKARPTSLVRAPSGIAGELFFQKHAEATSIPGIKLLDPKLDPGHAPLLEI
PSVTALLSATQVNVIEFHTWNATTRSIDKPDRMTFDLDPGEGVGWPQVQEAAQLVRAFLD
ELGLASFLKTSGGKGLHVVVPLKRQYDFDTVKDFSHAVVMHLAAVIPQRFVAKSGPKNRV
GKIFADYLRNGFGATTVAAWSLRARPGMGVSVPVAWDELPSLTGGAHWTAQTLGARLAVG
NQPWDAYEASRNSLGSAMKRLGFKPPRAGTTRKA
NT seq 2625 nt NT seq  +upstreamnt  +downstreamnt
atggccgcccgcgacctgctgaaagactaccgggccaagcgcgacttcaagcgcacaccc
gaacctgcgcacggcggcgcgcgcgcggacaaggccctcacctttgtcatccagaagcac
gacgcgcgcaacctgcactacgacttccgcctcgagctgcaaggcacgcttaaaagctgg
gccgttcccaaggggcccagcctggaccccagcgtcaaacgcatgggtgtgcacgtggaa
gaccacccgctttcttacgccgcctttgaaggcagcatcccggccaaacagtacggcgcg
ggtgatgtgatcgtctgggaccgcggattgtggacaccgctgggcgacccggtgaaaggc
ctcaaaagcggcaagctcaagtttgagctgcatggcgaaaagctcaaaggcggctggacg
ctggtgcgcatgcacggccgcggcggcgacaggcaggagccctggctgctgatcaaggag
catgacgaacatgcgcgcagcgaaaaagagtttgatgtgctcaaggcgctgcccgacagc
gtgctatcgggcaatcctctacctggcaaaaccggaaaaaccggcaagacaccggctaaa
aagacacagagcaaagagtcacgggtcaaggcgcctgccaaaaaagccgccgatgacatt
ccggaaggcgccaccaaagccaaactgcccgaaacgctggcgccgcaactggccacactg
gtcacccgcccgcccgccgaccccgaaggctgggtctatgaaatcaagtacgacggttac
cggatgctggcgcgcattgaaggccgctcggtgaagctctttacccgcaacggcaatgac
tggacgacgaagctgccgaaactggccaaggcggtggccgcgctggacttgccttccggc
tggatagacggcgagattgtggtgatgaacgagcagggtgtcccggacttcggtgcgctg
caaaacgcctttgaccgcgccagcaccgccaacattctttactacgtgttcgacctgccc
ttctttgacggcctggacctgcgcgagctgccgctcacccagcggcgcgaagtgctgtgc
acgctggtcacccgccatccgcagggcagcatccgcttcagcgacgcgtttgaccaggcg
ccgcaagacctgctcgactccgcccgccgcgtcgggctggagggcgtgatcggcaagcgc
gccgactctgcctacgtatcgcgccgctcacccaactggatcaagctcaagacgcagctg
cgccaggaatttgtgattggcggctacacggcgcccaagggctcacgcaccggcctgggc
gcgctgatgctgggcgtgcacgacgagcacggcaagctgcagtacgccggcaatgtcggc
accggctttaacgacaagacgctggacagcctgacggcccggctgcaaaagcttcatgcc
gatcgcagcccgtttgcaaagctgcccgccggcgtcaaaggccaatgggtcaagccgcgt
ttgctcgccgaggtggccttcggggaatggacccacggcgggctgatccgccactccgtg
ttccagggcttgcgcaccgacaaacccgccacacacatcattcgggagaaacccgccgcg
cttgccgccgggaaaggagccgccatgcctctcgccaaaaagacccctgccgccaaaccg
gccgcaaagacggccgccaaacccgttcctgcggcgctgaaatccttgcgcgtgacacac
gccgaccgcgtgatcgatgccagcaccggcctgaccaaacaggacgtggtcgagcactat
gccggcgttgcggcgctcatgctgccgcacctcaaggccaggccgacctcgctggtgcgc
gcgccgtcgggcatcgcgggcgagttgttcttccagaagcatgccgaggccacctccatc
ccgggcatcaagctgctggacccgaaactcgacccgggccatgcaccgctgctggagatt
ccctccgtcaccgccctgctctcggccacccaggtcaatgtgatcgagttccacacctgg
aacgccaccacccgttccatcgacaagcccgaccgcatgacctttgacctggacccgggc
gaaggcgtgggctggccgcaggtgcaggaggccgcgcagctggtgcgcgccttcctggac
gagctggggctggccagcttcctgaagaccagcggcggcaagggcctgcatgtggtggtg
ccgctcaagcgccagtacgacttcgacacggtgaaggacttttcgcatgcggtggtgatg
cacctggcggcggtgattccccagcgctttgtggccaaaagcggccccaaaaaccgcgtg
ggcaaaatttttgcggactacctgcgcaacggcttcggcgccaccacggtggcggcctgg
tcgctgcgggcccggcccggcatgggtgtgtcggtgccggtggcctgggatgagctgcct
tcgctcaccggcggcgcgcactggacggcgcagacactcggagcgcgcctggccgtcggc
aaccagccgtgggacgcctacgaagcgtcccgcaacagcctgggcagcgcgatgaagcgc
ctgggcttcaagccgccgcgcgcgggcaccacacgcaaggcgtga

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