Porphyrobacter sp. YT40: E2E27_12565
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Entry
E2E27_12565 CDS
T06153
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot03410
Base excision repair
pot03430
Mismatch repair
pot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E2E27_12565 (recJ)
03430 Mismatch repair
E2E27_12565 (recJ)
03440 Homologous recombination
E2E27_12565 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_12565 (recJ)
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E2E27_12565 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E2E27_12565 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E2E27_12565 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QDH35081
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Position
2678999..2680798
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AA seq
599 aa
AA seq
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MATNPISAPGLAPVLGVAASLSGKAWRWRGGNMELGEDVHGLTHSILDQLLLTRGVAEDD
LARHAQPTLRAFLPDPSTFRDMDSAAERLARAVMAGERVTIYGDYDVDGATSAALLVELL
RQLGLEAGYYIPDRLLEGYGPSGEALVKLAEAGSQLIVTVDCGAMAHEALGMARAAGVDV
IVVDHHKCSPELPPAHALVNPNRLDESDLGAAHGHLAAVGVAFLLGVALVRTLRAQGWFA
DGRREPELMGLLDLVALGTVADVAALHGLNRAFVAQGLKVLARRERIGMAALMDASRLAR
APQCSDLGFALGPRINAGGRIGESTLGVRLLTTTDPEEARAIAAQLSQLNEERRAIEAMV
QEAAEAQLAGQHNMAVQVLSGHGWHPGVIGIVAGRIKEKTGKPAVVIALEEAQGKGSGRS
ISGVDLGAAIIAAREAGLLVAGGGHAMAAGLTIDPARMADFAEFLDTRLARDVERARAGA
AMLLDLALAPGGLTPELIETLDAAGPYGVGWPAPRVAVGPVRIVKADIVGKDHVRLIASG
SDGKSFKAIAFRAAESEMGQTLLHRHQGRRFHLAGRAKIDDWGSRPAAELQLEDAAFAD
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaccccatttccgctcccggtctcgcgccggttctcggcgttgccgcctcg
ctgtcgggcaaggcgtggcgctggcgcggggggaatatggaactgggcgaggatgtgcac
ggcctgacccattcgatcctcgatcagctgctgctgacccgcggcgtggcggaggacgac
ctcgcccgtcacgcccaacccaccttgcgcgctttcctgcccgacccttcgaccttccgc
gacatggattccgccgccgagcgtctggcccgggcggtcatggcgggcgagcgggtgacg
atctacggcgactacgacgtcgacggcgcgaccagtgcggcgctactggtcgaactgctg
cgccagctggggctggaggcgggctattacatccccgatcgcctgctcgaaggctatggc
ccctcgggcgaggcgctggtgaagctggccgaagccggatcgcagctgatcgtcaccgtc
gattgcggtgcgatggcgcacgaggcgctcggcatggcccgcgcggccggcgtcgacgtg
atcgtggtcgatcaccacaagtgctcgcccgagcttccgccggcgcacgcgctggtcaat
cccaaccggctcgacgagagcgaccttggtgcggcccacgggcacctcgcagcggtgggc
gtggccttcctgctcggcgtcgcgctggtgcggacgctgcgcgcgcaaggctggtttgcc
gatggtcgccgcgagccggagctgatgggcctgctcgatctggtagccttgggcacggtc
gccgatgtcgccgctttgcatggcctcaatcgcgctttcgtggcgcaagggctgaaggtt
ctcgcccggcgcgagcggatcgggatggcggcgttgatggatgcaagccgtctcgcccgc
gcgccgcaatgcagtgacctcggcttcgcgctcggcccacgcatcaatgcgggaggacgg
atcggcgaatcgaccctcggcgtgcggctgctgacaaccaccgatcccgaagaagcacgc
gcaattgccgcccagctctcgcaattgaacgaagagcgccgtgcgatcgaggcgatggtg
caggaagccgccgaggcgcagctggccgggcagcacaatatggcggtgcaggtgctttcg
gggcacggctggcaccccggcgtgatcgggatcgtggcgggccggatcaaggagaagacc
ggcaagcccgccgtggtgatcgccttggaagaggcgcagggcaagggctccggccggtcg
atcagcggggtcgatctgggcgcggcgatcatcgccgcgcgcgaggccgggttgctggtc
gcgggcggcgggcacgcgatggcggcagggctcacgatcgacccggcgcggatggccgat
ttcgccgagttcctcgacacccgcctcgctcgcgatgtcgagcgcgcgcgggccggggcg
gcgatgctgctcgatctcgcgctcgcccccggagggctgacgcccgaactgatcgaaacg
ctcgatgccgcagggccctacggcgtcggctggcccgcgccgcgcgtcgcggtggggccg
gtgcggatcgtcaaggcggatatcgtcggcaaggatcacgtccggctgatcgccagcggc
agtgacggcaagagcttcaaggcgatcgcctttcgtgcggcggaaagcgagatgggtcag
accctgctccaccgccaccagggccgccgcttccacctcgccgggcgcgccaagatcgac
gactggggcagccgccccgccgccgagctgcaactggaagatgccgccttcgccgattga
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