Paralichthys olivaceus (Japanese flounder): 109627509
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Entry
109627509 CDS
T06037
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pov03009
]
109627509 (pdcd11)
Ribosome biogenesis [BR:
pov03009
]
Eukaryotic type
90S particles
Other 90S particles
109627509 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
Spt6_S1
TPR_14
TPR_19
Suf
TPR_16
NRDE-2
TPR_15
PPR
ANAPC3
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
109627509
NCBI-ProteinID:
XP_019939596
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MASAEEDFPRGGTAKKSTDGKPVVHRGEVDNLFQSNEQAETKRKRKAALKDDARKLKKQK
TGKEKNDGLALNAAAKCVEILHMKNVKEGMLMLGVVKDVADFEVAVSLPCGLQGFLSIKN
ISDSYTKLLSEQLDSADTEDICSLPHLFSPGMVIRCVVAKLDVAKGGSLSIQLSVNPKLV
NKALNSSSLKAGMILSGCVESVEDHGCIVDIGINGSKAFLSKTADKQHNLDELKVGQYLT
CKVEELKNEGRVARLSVNPPTIAQAWAESEQGWNLTNLLPGLLVKATIKKVTKHGLILDF
LSSFSGQVDFLHMEPEQASNYTEGTEVHACVLYIELSTRLVGLSLRSYLVQPRQGVNTNP
SGGDRIGEVVKDCKMTTVHHMSGAMLELPGGTLAFVHRNHMKELNKSVNENKVLAKPEHT
CRILDFSPMDQIHFATLRWSVIERPYYRYHDLQAGQIVEGKVSVLLSHGMVVHLSNHIKG
LVPRTHLSDIILKNPEKKYVEGMKVKCRVLSVDPANKKLYLTRKKALVESSLPLVLSYND
ARPGCVSHGYIVCIKSFGCIVRFYNNIKGLVPISELGSEPISSPEEVFYVGQVLKTKVLK
CDPEKEKMMLSFKAAVEGDTEEAAKVPDDLEVGKQVEAKVLKKLINGLEVAILPDEIRAI
LPTMHLSDHMSNCPLMWESLQEGDNISNLVCFSKNKQQISLTKKPTVRWALEEGLVAKDF
SEITVGMQLIGWVKNIMSYGVFVEFPHGLVGLAPKSAMTDKFLSDTAAAFQLGQTVIAKV
TNLDEEKRRFLVTLKISEVITPDGDAQTRLINGLQERRAVNEMLAMKDNCDLRQQLTALC
VGQTLKLTVDTVNDDGATFKSHDLVSATILANKYHVMGVNLTEGQKVTAVILHVHILSAS
VHVSVLPKLVAKKKSLSEGSKHIAMLQYIDNDFAVVSLDNTAKLTVIHTRSHLNEVLLSE
SDKLKGGMILAVEVIEPSCHELQGLPLVSWQRTAPRRQRTTSDNQQDSKGHRFGDILQGK
VRTVKPVCIQVTLEDGSMGSVHVSEVMEATKVCQGSFPTSSVKVGSTVTARVIGGREASS
NRFLPFSHPKYTYTIPELTLIPSKVDKSSDFTPVGAKEKLESYTVGEEITCFVSKFNPKK
KLLEVTTDPRITGTVELLAMITDPKDASHPEKLFKLGQAVCAKVVETNSKPHRFVLSLTG
VHTLEEGSVALGMVTDIRPQGLLVKLPFGGKGFVAVTELADAYRPNPLDAYSKDQLLRCF
LIACENGKWQLSLRPSRLNPQQAKLVKDPEVLSIDHLKEGQIIRGYVTSVGEQGVFIRLS
RVITGRAQLQQSTKYFVRNHQVLAEHLPPNTLLTTKISSIDREEEFVNLSLLPVDTGKPD
ILPESLSLPLRLIGEEKKKYDAVKKKRTLSESEQVPKKKKKTKKAKGDDNDSGVEVYFRE
EEDQEDEPKSEAAKPVTSSSAGPSRLQVTAGFSWDVGLNSLKPASAAQDGDSSDGEDQDG
SSKPQKKSRHELELEKKAAEKALVQREVELMDPNLRPEDAAAFERLLLASPNSSLLWLQY
MAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERAL
QFCEPMPVYQQLADIYAKSDKIKEAEGLYKTMVKRFRQNKAVWLSFGSFLLQQGQSDAAA
ALLQRALKSLPSKESVDVIAKFAQLEFRYGDVEKGRTMFDKVLTSYPKRTDLWSVFIDLM
IKHGSQKEVRVLFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTTQSIQAVKEKAMEFVEAK
GTEAAN
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcagaggaggacttccctcgaggagggacagcgaagaagagcactgatggt
aaaccggtggttcatcggggtgaagtggacaatctcttccagtcaaacgaacaggcagaa
acgaaaaggaaaagaaaggcagcgctcaaagatgatgccaggaaactcaagaagcaaaag
acaggcaaagaaaagaatgatggtcttgcgctcaacgcagcagccaagtgtgtggaaatc
ctgcatatgaagaatgtgaaggagggcatgctgatgctgggcgttgtgaaggatgtcgca
gactttgaggtggcggtcagtctgccttgtggtctacaaggtttcctcagcatcaagaac
atcagcgactcgtacaccaagctgctcagtgagcagctggattcagctgacacagaggac
atctgctctctgcctcacctcttctcccccggcatggtgataagatgtgtggttgcaaag
ctggacgtagcgaagggaggctctctgagcatccagctgtcagtcaatccaaagctggtg
aacaaggctctcaactcaagctcactgaaagctggcatgatcttgagtggatgtgtggag
agtgtggaggatcatggttgcatagttgacatcggcatcaacgggtccaaagccttcctg
tccaagacagcagacaaacaacacaatctggacgagctgaaagtaggtcagtatttgact
tgtaaagtggaagaattaaagaatgaaggacgtgttgcacggctctctgtcaaccccccg
actatcgcccaggcctgggctgagtccgagcagggctggaacctcaccaacctgctgcct
ggtctgctggtcaaagccacaatcaaaaaggtgacaaaacatggtctgatcctggacttc
ctgtcctcattcagtggccaggtggactttctgcacatggagccagaacaggcatcaaac
tacacagagggaactgaggtacatgcatgtgtgctttacatagagctgtccacgcgcctc
gtgggtttgagtctgcgcagctaccttgttcagcccaggcaaggagtgaacactaatccc
tccggtggcgaccgcattggtgaggtggtgaaggactgtaagatgaccactgtacaccac
atgtctggagccatgttggaactgcccggtggaacgttggcatttgtgcataggaaccac
atgaaggagttgaataaatcagttaatgagaacaaagtgctggcaaagcctgagcacact
tgcaggatcctggacttcagccccatggaccaaattcatttcgccactctgcgctggagt
gtgattgagaggccttattatagatatcatgatcttcaggctggacaaattgtggagggg
aaagtgtcagtcctgctgagtcatgggatggtggtgcatctgtccaaccacattaaaggt
ctggtgcctcggacccacctgtctgacatcatcctcaagaacccggagaagaagtacgtc
gagggaatgaaggtcaaatgtcgggtgctatctgtggatccagcaaataagaagctgtac
ctgaccagaaagaaggccttggtagaaagctccctgccattggtcctcagctataacgat
gctcgtcctggctgcgtgtcccacggctacatcgtctgcatcaaaagcttcggctgcatt
gttcgtttttacaacaacatcaagggtctggtgccgatcagtgaactcggctctgagccc
atcagcagtcctgaggaggtcttctatgttggacaggtgttaaagactaaagttctcaaa
tgcgaccctgagaaggaaaagatgatgctgtcctttaaagctgcagtagagggagacact
gaggaggctgccaaagtcccggacgacttggaggtggggaagcaggtggaggccaaagtg
ctgaaaaagttaatcaacggtctggaggtcgccatcctgcctgatgagatacgagccatt
ctacccaccatgcacctctctgatcacatgtccaactgccctctgatgtgggagagcctg
caggagggagacaacatctcgaacctcgtctgtttcagcaagaacaaacagcaaatttcg
ctcactaagaaaccgacggtgaggtgggcattggaggagggactggttgctaaggatttc
tctgagatcacagttggaatgcagctgattggctgggtcaagaacatcatgtcctatggc
gtctttgtggagttcccacatggccttgtgggcctggcacccaagtcggccatgactgac
aagttcctcagcgacacagcagccgccttccagctgggccagaccgtcattgccaaggtg
accaacctggatgaggaaaagcggcgtttcctggtcactctgaagatttcagaggtcata
actccagacggggacgcccagaccagacttattaatggtctgcaggagagaagagctgtg
aatgaaatgctggcaatgaaagataactgtgatcttcgccagcagctgactgctctgtgt
gttggtcagacgctgaagttgaccgtggacactgtgaacgacgacggagcaacatttaag
tctcatgacttggtcagtgctaccatactggccaacaagtaccatgtcatgggtgttaac
ttgactgaaggacagaaggttactgccgtcatccttcatgtccacatcctgtctgcctct
gtccatgtgtctgtccttcccaagctggtggcaaagaagaaatctttgagtgaaggatca
aaacacatagcgatgttgcagtacatagacaatgactttgctgtggtctcattggacaat
acggcaaagctgacagtgatccataccaggagccacctgaacgaggtcttactctctgag
tcagacaagctgaagggaggaatgattttggccgttgaggtgatagaacccagctgtcac
gaactacaagggctccctctagtgtcttggcaacgcactgcacctagacgacagcgcaca
acctctgataaccagcaggactccaagggtcaccgcttcggcgatatcctgcaggggaaa
gtgcggacggtgaagcctgtctgcattcaggtcacactggaggatggaagcatgggcagc
gtacacgtgtctgaggtgatggaggccacaaaagtgtgtcagggatctttcccgacgtcc
tcagtgaaagtgggcagcacggtcaccgcccgggtcatcgggggacgagaagcctccagt
aacagattcttaccattctctcatcccaaatatacatacaccattcctgagctcactcta
atacccagcaaagtagataaaagttcagatttcacaccagttggagcaaaagaaaaactt
gagagctacacagtcggagaagaaattacatgctttgtatcaaagtttaatccaaagaag
aagttgttggaagtcaccactgatccacgtattactggcacagttgaacttctggccatg
atcactgatcctaaagatgccagtcacccagagaagctgttcaagctgggccaagcagtg
tgtgctaaagtggtcgaaacaaactccaaacctcatcgctttgtgctgtcactcacagga
gtccatacactagaggaaggcagcgttgctttggggatggtgactgatattcggccacaa
ggcctcctggtcaagcttccctttggtggcaagggctttgttgctgtaactgagctggct
gatgcctacaggccgaacccactggatgcatacagcaaggatcagctcctcaggtgtttc
ctcattgcgtgtgaaaatggcaagtggcagttgtctctacgtccatcaaggctgaatcca
cagcaggccaagctagtgaaagacccagaggttttgtctatagaccacctgaaagaaggc
cagatcatcagaggctacgtcacgtctgtgggagagcagggggtcttcatcaggttgtct
cgggttataactggaagagcccaactgcagcagtccaccaagtactttgttcgcaaccac
caggtcctcgctgagcacctgcctcccaacacgctgctcaccacaaagatctccagtatt
gacagagaggaggaatttgtcaacctctctctgctccctgtggacaccgggaagccggac
atccttccagaatctctcagtctgccactgcggctgatcggagaggagaagaagaaatat
gatgctgttaagaagaaacgcactctttctgagagcgaacaggtcccaaagaaaaagaaa
aagacgaaaaaagcgaagggtgacgataatgacagcggagtggaggtgtacttccgggaa
gaggaggatcaggaagatgaacccaaatctgaggctgcaaaaccggtgacgtccagctca
gcaggtccatccagactacaggtcacggcaggtttctcttgggacgtgggcttgaactcc
ctgaagccggcttctgcagctcaggatggggactccagtgatggagaggaccaagacgga
agcagcaagccacagaagaagtctcgtcatgagctggagctggagaaaaaggcggcagag
aaggcactggtacagcgggaagttgagctcatggatccgaacctgcgccccgaagacgca
gctgcctttgagcgcctgctcctggcctcacccaacagctctttgctgtggctccagtac
atggctcaccatctgcaggccacacaaattgagcaggcccgtgctgtggcagagagggct
ctcaaaactatttccttcagggaggagcaggagaagctgaatgtgtgggtggcactgctg
aacctggagaacatgtacggcacagaggagagcctgaagaaagtgtttgagcgggctctg
cagttctgtgagcccatgcccgtctaccagcagctggctgacatctacgccaagtccgac
aagatcaaggaggcagagggcttgtacaagacgatggtgaagcgtttccgtcagaataag
gccgtgtggctgagcttcgggtccttcctgctccagcagggtcagagcgatgctgccgct
gctctcctgcagagggcgctgaaaagcctgccctctaaagaaagtgtggatgtgattgcc
aagtttgctcagctggagttccgttacggggatgtggagaaaggtcgcaccatgtttgac
aaagtcctgacaagttatccgaaacgtacagatctctggtccgtcttcatcgacctgatg
atcaagcatggatcacagaaggaagtcagggtgctctttgatcgtgtgatccacctgagc
gtttcagtgaaaaagatcaagttcttcttcaagcgctacctggagtacgaaaagaagcac
ggcaccacgcagagcatccaggcagtcaaagagaaggcaatggagtttgtggaagctaaa
ggcacagaggctgcaaactaa
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integrated database retrieval system