KEGG   Paralichthys olivaceus (Japanese flounder): 109627509
Entry
109627509         CDS       T06037                                 
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
  KO
K14792  rRNA biogenesis protein RRP5
Organism
pov  Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:pov00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pov03009]
    109627509 (pdcd11)
Ribosome biogenesis [BR:pov03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    109627509 (pdcd11)
SSDB
Motif
Pfam: S1 Spt6_S1 TPR_14 TPR_19 Suf TPR_16 NRDE-2 TPR_15 PPR ANAPC3 Wzy_C_2
Other DBs
NCBI-GeneID: 109627509
NCBI-ProteinID: XP_019939596
LinkDB
Position
Unknown
AA seq 1806 aa
MASAEEDFPRGGTAKKSTDGKPVVHRGEVDNLFQSNEQAETKRKRKAALKDDARKLKKQK
TGKEKNDGLALNAAAKCVEILHMKNVKEGMLMLGVVKDVADFEVAVSLPCGLQGFLSIKN
ISDSYTKLLSEQLDSADTEDICSLPHLFSPGMVIRCVVAKLDVAKGGSLSIQLSVNPKLV
NKALNSSSLKAGMILSGCVESVEDHGCIVDIGINGSKAFLSKTADKQHNLDELKVGQYLT
CKVEELKNEGRVARLSVNPPTIAQAWAESEQGWNLTNLLPGLLVKATIKKVTKHGLILDF
LSSFSGQVDFLHMEPEQASNYTEGTEVHACVLYIELSTRLVGLSLRSYLVQPRQGVNTNP
SGGDRIGEVVKDCKMTTVHHMSGAMLELPGGTLAFVHRNHMKELNKSVNENKVLAKPEHT
CRILDFSPMDQIHFATLRWSVIERPYYRYHDLQAGQIVEGKVSVLLSHGMVVHLSNHIKG
LVPRTHLSDIILKNPEKKYVEGMKVKCRVLSVDPANKKLYLTRKKALVESSLPLVLSYND
ARPGCVSHGYIVCIKSFGCIVRFYNNIKGLVPISELGSEPISSPEEVFYVGQVLKTKVLK
CDPEKEKMMLSFKAAVEGDTEEAAKVPDDLEVGKQVEAKVLKKLINGLEVAILPDEIRAI
LPTMHLSDHMSNCPLMWESLQEGDNISNLVCFSKNKQQISLTKKPTVRWALEEGLVAKDF
SEITVGMQLIGWVKNIMSYGVFVEFPHGLVGLAPKSAMTDKFLSDTAAAFQLGQTVIAKV
TNLDEEKRRFLVTLKISEVITPDGDAQTRLINGLQERRAVNEMLAMKDNCDLRQQLTALC
VGQTLKLTVDTVNDDGATFKSHDLVSATILANKYHVMGVNLTEGQKVTAVILHVHILSAS
VHVSVLPKLVAKKKSLSEGSKHIAMLQYIDNDFAVVSLDNTAKLTVIHTRSHLNEVLLSE
SDKLKGGMILAVEVIEPSCHELQGLPLVSWQRTAPRRQRTTSDNQQDSKGHRFGDILQGK
VRTVKPVCIQVTLEDGSMGSVHVSEVMEATKVCQGSFPTSSVKVGSTVTARVIGGREASS
NRFLPFSHPKYTYTIPELTLIPSKVDKSSDFTPVGAKEKLESYTVGEEITCFVSKFNPKK
KLLEVTTDPRITGTVELLAMITDPKDASHPEKLFKLGQAVCAKVVETNSKPHRFVLSLTG
VHTLEEGSVALGMVTDIRPQGLLVKLPFGGKGFVAVTELADAYRPNPLDAYSKDQLLRCF
LIACENGKWQLSLRPSRLNPQQAKLVKDPEVLSIDHLKEGQIIRGYVTSVGEQGVFIRLS
RVITGRAQLQQSTKYFVRNHQVLAEHLPPNTLLTTKISSIDREEEFVNLSLLPVDTGKPD
ILPESLSLPLRLIGEEKKKYDAVKKKRTLSESEQVPKKKKKTKKAKGDDNDSGVEVYFRE
EEDQEDEPKSEAAKPVTSSSAGPSRLQVTAGFSWDVGLNSLKPASAAQDGDSSDGEDQDG
SSKPQKKSRHELELEKKAAEKALVQREVELMDPNLRPEDAAAFERLLLASPNSSLLWLQY
MAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERAL
QFCEPMPVYQQLADIYAKSDKIKEAEGLYKTMVKRFRQNKAVWLSFGSFLLQQGQSDAAA
ALLQRALKSLPSKESVDVIAKFAQLEFRYGDVEKGRTMFDKVLTSYPKRTDLWSVFIDLM
IKHGSQKEVRVLFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTTQSIQAVKEKAMEFVEAK
GTEAAN
NT seq 5421 nt   +upstreamnt  +downstreamnt
atggcatcagcagaggaggacttccctcgaggagggacagcgaagaagagcactgatggt
aaaccggtggttcatcggggtgaagtggacaatctcttccagtcaaacgaacaggcagaa
acgaaaaggaaaagaaaggcagcgctcaaagatgatgccaggaaactcaagaagcaaaag
acaggcaaagaaaagaatgatggtcttgcgctcaacgcagcagccaagtgtgtggaaatc
ctgcatatgaagaatgtgaaggagggcatgctgatgctgggcgttgtgaaggatgtcgca
gactttgaggtggcggtcagtctgccttgtggtctacaaggtttcctcagcatcaagaac
atcagcgactcgtacaccaagctgctcagtgagcagctggattcagctgacacagaggac
atctgctctctgcctcacctcttctcccccggcatggtgataagatgtgtggttgcaaag
ctggacgtagcgaagggaggctctctgagcatccagctgtcagtcaatccaaagctggtg
aacaaggctctcaactcaagctcactgaaagctggcatgatcttgagtggatgtgtggag
agtgtggaggatcatggttgcatagttgacatcggcatcaacgggtccaaagccttcctg
tccaagacagcagacaaacaacacaatctggacgagctgaaagtaggtcagtatttgact
tgtaaagtggaagaattaaagaatgaaggacgtgttgcacggctctctgtcaaccccccg
actatcgcccaggcctgggctgagtccgagcagggctggaacctcaccaacctgctgcct
ggtctgctggtcaaagccacaatcaaaaaggtgacaaaacatggtctgatcctggacttc
ctgtcctcattcagtggccaggtggactttctgcacatggagccagaacaggcatcaaac
tacacagagggaactgaggtacatgcatgtgtgctttacatagagctgtccacgcgcctc
gtgggtttgagtctgcgcagctaccttgttcagcccaggcaaggagtgaacactaatccc
tccggtggcgaccgcattggtgaggtggtgaaggactgtaagatgaccactgtacaccac
atgtctggagccatgttggaactgcccggtggaacgttggcatttgtgcataggaaccac
atgaaggagttgaataaatcagttaatgagaacaaagtgctggcaaagcctgagcacact
tgcaggatcctggacttcagccccatggaccaaattcatttcgccactctgcgctggagt
gtgattgagaggccttattatagatatcatgatcttcaggctggacaaattgtggagggg
aaagtgtcagtcctgctgagtcatgggatggtggtgcatctgtccaaccacattaaaggt
ctggtgcctcggacccacctgtctgacatcatcctcaagaacccggagaagaagtacgtc
gagggaatgaaggtcaaatgtcgggtgctatctgtggatccagcaaataagaagctgtac
ctgaccagaaagaaggccttggtagaaagctccctgccattggtcctcagctataacgat
gctcgtcctggctgcgtgtcccacggctacatcgtctgcatcaaaagcttcggctgcatt
gttcgtttttacaacaacatcaagggtctggtgccgatcagtgaactcggctctgagccc
atcagcagtcctgaggaggtcttctatgttggacaggtgttaaagactaaagttctcaaa
tgcgaccctgagaaggaaaagatgatgctgtcctttaaagctgcagtagagggagacact
gaggaggctgccaaagtcccggacgacttggaggtggggaagcaggtggaggccaaagtg
ctgaaaaagttaatcaacggtctggaggtcgccatcctgcctgatgagatacgagccatt
ctacccaccatgcacctctctgatcacatgtccaactgccctctgatgtgggagagcctg
caggagggagacaacatctcgaacctcgtctgtttcagcaagaacaaacagcaaatttcg
ctcactaagaaaccgacggtgaggtgggcattggaggagggactggttgctaaggatttc
tctgagatcacagttggaatgcagctgattggctgggtcaagaacatcatgtcctatggc
gtctttgtggagttcccacatggccttgtgggcctggcacccaagtcggccatgactgac
aagttcctcagcgacacagcagccgccttccagctgggccagaccgtcattgccaaggtg
accaacctggatgaggaaaagcggcgtttcctggtcactctgaagatttcagaggtcata
actccagacggggacgcccagaccagacttattaatggtctgcaggagagaagagctgtg
aatgaaatgctggcaatgaaagataactgtgatcttcgccagcagctgactgctctgtgt
gttggtcagacgctgaagttgaccgtggacactgtgaacgacgacggagcaacatttaag
tctcatgacttggtcagtgctaccatactggccaacaagtaccatgtcatgggtgttaac
ttgactgaaggacagaaggttactgccgtcatccttcatgtccacatcctgtctgcctct
gtccatgtgtctgtccttcccaagctggtggcaaagaagaaatctttgagtgaaggatca
aaacacatagcgatgttgcagtacatagacaatgactttgctgtggtctcattggacaat
acggcaaagctgacagtgatccataccaggagccacctgaacgaggtcttactctctgag
tcagacaagctgaagggaggaatgattttggccgttgaggtgatagaacccagctgtcac
gaactacaagggctccctctagtgtcttggcaacgcactgcacctagacgacagcgcaca
acctctgataaccagcaggactccaagggtcaccgcttcggcgatatcctgcaggggaaa
gtgcggacggtgaagcctgtctgcattcaggtcacactggaggatggaagcatgggcagc
gtacacgtgtctgaggtgatggaggccacaaaagtgtgtcagggatctttcccgacgtcc
tcagtgaaagtgggcagcacggtcaccgcccgggtcatcgggggacgagaagcctccagt
aacagattcttaccattctctcatcccaaatatacatacaccattcctgagctcactcta
atacccagcaaagtagataaaagttcagatttcacaccagttggagcaaaagaaaaactt
gagagctacacagtcggagaagaaattacatgctttgtatcaaagtttaatccaaagaag
aagttgttggaagtcaccactgatccacgtattactggcacagttgaacttctggccatg
atcactgatcctaaagatgccagtcacccagagaagctgttcaagctgggccaagcagtg
tgtgctaaagtggtcgaaacaaactccaaacctcatcgctttgtgctgtcactcacagga
gtccatacactagaggaaggcagcgttgctttggggatggtgactgatattcggccacaa
ggcctcctggtcaagcttccctttggtggcaagggctttgttgctgtaactgagctggct
gatgcctacaggccgaacccactggatgcatacagcaaggatcagctcctcaggtgtttc
ctcattgcgtgtgaaaatggcaagtggcagttgtctctacgtccatcaaggctgaatcca
cagcaggccaagctagtgaaagacccagaggttttgtctatagaccacctgaaagaaggc
cagatcatcagaggctacgtcacgtctgtgggagagcagggggtcttcatcaggttgtct
cgggttataactggaagagcccaactgcagcagtccaccaagtactttgttcgcaaccac
caggtcctcgctgagcacctgcctcccaacacgctgctcaccacaaagatctccagtatt
gacagagaggaggaatttgtcaacctctctctgctccctgtggacaccgggaagccggac
atccttccagaatctctcagtctgccactgcggctgatcggagaggagaagaagaaatat
gatgctgttaagaagaaacgcactctttctgagagcgaacaggtcccaaagaaaaagaaa
aagacgaaaaaagcgaagggtgacgataatgacagcggagtggaggtgtacttccgggaa
gaggaggatcaggaagatgaacccaaatctgaggctgcaaaaccggtgacgtccagctca
gcaggtccatccagactacaggtcacggcaggtttctcttgggacgtgggcttgaactcc
ctgaagccggcttctgcagctcaggatggggactccagtgatggagaggaccaagacgga
agcagcaagccacagaagaagtctcgtcatgagctggagctggagaaaaaggcggcagag
aaggcactggtacagcgggaagttgagctcatggatccgaacctgcgccccgaagacgca
gctgcctttgagcgcctgctcctggcctcacccaacagctctttgctgtggctccagtac
atggctcaccatctgcaggccacacaaattgagcaggcccgtgctgtggcagagagggct
ctcaaaactatttccttcagggaggagcaggagaagctgaatgtgtgggtggcactgctg
aacctggagaacatgtacggcacagaggagagcctgaagaaagtgtttgagcgggctctg
cagttctgtgagcccatgcccgtctaccagcagctggctgacatctacgccaagtccgac
aagatcaaggaggcagagggcttgtacaagacgatggtgaagcgtttccgtcagaataag
gccgtgtggctgagcttcgggtccttcctgctccagcagggtcagagcgatgctgccgct
gctctcctgcagagggcgctgaaaagcctgccctctaaagaaagtgtggatgtgattgcc
aagtttgctcagctggagttccgttacggggatgtggagaaaggtcgcaccatgtttgac
aaagtcctgacaagttatccgaaacgtacagatctctggtccgtcttcatcgacctgatg
atcaagcatggatcacagaaggaagtcagggtgctctttgatcgtgtgatccacctgagc
gtttcagtgaaaaagatcaagttcttcttcaagcgctacctggagtacgaaaagaagcac
ggcaccacgcagagcatccaggcagtcaaagagaaggcaatggagtttgtggaagctaaa
ggcacagaggctgcaaactaa

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