Paralichthys olivaceus (Japanese flounder): 109627896 Help Entry 109627896         CDS       T06037                                  Definition (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism pov  Paralichthys olivaceus (Japanese flounder) Pathway pov04115   p53 signaling pathway pov04145   Phagosome pov04350   TGF-beta signaling pathway pov04510   Focal adhesion pov04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:pov00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109627896   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109627896  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109627896   09143 Cell growth and death    04115 p53 signaling pathway     109627896   09144 Cellular community - eukaryotes    04510 Focal adhesion     109627896  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pov04131]     109627896   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pov00536]     109627896    04990 Domain-containing proteins not elsewhere classified [BR:pov04990]     109627896 Membrane trafficking [BR:pov04131]  Endocytosis   Phagocytosis    Opsonins     109627896 Glycosaminoglycan binding proteins [BR:pov00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109627896 Domain-containing proteins not elsewhere classified [BR:pov04990]  Thrombospondin domain-containing proteins   Thrombospondins    109627896 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 EGF_CA cEGF EGF Laminin_G_3 TSP1_CCN Laminin_G_2 hEGF Motif Other DBs NCBI-GeneID:  109627896 NCBI-ProteinID:  XP_019940276 LinkDB All DBs Position Unknown AA seq 1258 aa AA seqDB search MESGKHIHPCKELQEMLLLIAVAQWAVHPCVMPPNGSTTGKCQSRDFGICKPKKAKQNAS ASPLNMTQHITKRTSRLRRTSNEARLSVNTTLHERTVSLSVSLSHRELESRDDNSVYDLF DLAQVSKRNHGVSVVKGADPYSPAYKVLNPDLIPPVPDSSFRDLLDSIQAERGFLLLLNL KQFKRSRGSLLTIEKNDGSGPIFEVISNGKASTLDVVYSTMSQQQVVSIEDADLATGHWK NITLFVQDDRVQLFVGCEEINVSELDVPIQKVLTQEVADIARLRIGKGAVKERFMGVLQN VRFVFGTTLDAILRNKGCQSGASLSDVMTLDNPVNGSSPAIRTDFTGHKSKDVQSVCGLS CEDITSMFKELKSLGVVVKQLSHKLSKVSEDSNLLMNQMKIHRGVCFHNGVVYKDKDEWT VDGCTECTCQNSATVCRKISCPLIPCANATVPDGECCPRCGTQNYEEDGWSPWSEWTHCS VTCGRGIQQRGRSCDRINSNCEGTSVQTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCG EGVITRIRLCNSPTPQLGGRDCEGEGRQTEICQKSPCPINGGWGPWSPWDTCTVTCGGGV QTRKRLCSDPVPKYGGKDCVGDATMSQLCNKQDCPIDGCLSSPCFSGAKCTSFPDGSFRC GKCPLGYRGNGVICKDIDECKEVPDACHTHNGIHRCENTAPGYNCLPCPTRFSGLQPFGR GVEQATAKKQVCMPRNPCQDGSHNCNKNAKCIYLGVYSESMFRCECKPGYAGNGRICGED TDLDGWPNTDLLCVENATYHCKKDNCPNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRD NCPRVYNPAQYDADRDDVGDSCDNCVFEANADQTDTDNNGEGDACAVDIDGDGILNENDN CPYVYNVDQRDTDRDGVGDHCDNCPLEHNPDQIDSDSDLIGDKCDNNQDIDEDGHQNNLD NCPYIPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKD DFDQDNVLDIYDVCPENFAISETDFRRFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNC DPGIAVGYDEFSAVDFSGTFFINTDRDDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTP TRAQGYSGLSIKVVNSTTGPGEHLRNALWHTGDTSGQVRTLWHDPKNIGWKDFTAYRWHL IHRPKTGLIRVVMYEGKRIMADSGNIFDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3777 nt NT seq  +upstreamnt  +downstreamnt atggagtctggaaaacatatacatccctgcaaggagctccaggagatgctgctgctcatt gctgtggcccagtgggcagtgcacccctgtgttatgcctcccaatgggagcaccaccgga aagtgtcagtcacgagactttggcatctgcaaaccgaagaaagcaaaacaaaacgcttct gcttctccacttaacatgacacagcacattaccaagcggacaagtcgactgcgcaggacc tccaatgaggctcgactgtctgtaaacacaacactgcacgagaggactgtcagcctcagt gtttccttgagccacagagagcttgagagtcgtgatgataacagtgtgtacgacttattt gacctggcacaagtcagcaagagaaaccatggggtgagcgtggtgaagggtgcagacccc tacagccctgcatacaaggtcctgaacccagacctgatcccccctgtcccagacagctcc ttcagggacctcctcgactccatccaggccgagaggggcttcctcctcctcctcaacctc aagcagtttaagaggagccgcggcagcctcctcaccatcgagaagaacgacgggtccgga ccaatctttgaggtcatctccaatggcaaggcaagcaccctcgacgtggtctactccacc atgagccagcaacaggtggtgtcaatcgaggacgcagacttggcaaccggacactggaag aacatcacgttgtttgtgcaggatgaccgcgttcagctctttgtcggctgtgaggagatc aacgtgtcagagctggacgtgcccatccagaaggtgctgacccaagaggtggcagacatc gccaggctcaggattggaaagggagctgtgaaggagagattcatgggagtccttcagaat gtgcgctttgtctttgggacaactcttgatgccatactgagaaataaaggttgccagagt ggagcatctttatctgatgtcatgaccttggacaacccagtcaacggctccagtcctgcc attaggactgatttcaccggccacaaatccaaagatgtgcagtctgtctgtggcctctcc tgtgaggacatcaccagcatgtttaaggagctcaagagtctcggtgtagttgtcaaacag ctgtcgcacaagctcagcaaagtgtctgaggacagcaatctgctgatgaatcaaatgaag atccacagaggagtttgcttccacaatggagtcgtgtacaaggacaaagatgaatggact gtggacggctgcactgagtgcacctgccagaactctgctactgtgtgtcgcaaaatctcc tgccctctgatcccatgtgctaatgccaccgtgcccgatggagagtgctgccctcgctgt ggaacacagaactatgaggaggatggatggtctccctggtctgaatggacccattgttca gtgacttgtggccgtggcatccagcaacgtggacgctcgtgtgaccgcatcaacagcaac tgtgagggcacctctgtccagacccgtgactgctatcctcaggaatgtgacaaacgcttc aaacaggatggtggttggagtcactggtccccctggtcatcatgctctgtgacctgtggt gagggggtcatcacccggatccgcctctgtaactctcccacgccccagttgggtggcagg gactgcgagggagaaggacgtcagactgaaatatgccagaagtcgccttgccctatcaat ggaggttggggaccttggtcaccatgggacacctgcactgttacctgtggtggaggagtt cagacccgcaaacgtctctgctctgaccctgtccccaaatatggtggaaaagactgtgtt ggtgatgccaccatgtctcaattgtgcaacaaacaggactgtcctattgatggttgtctg tccagcccatgcttctcaggcgcaaagtgcaccagcttccctgatggttctttcaggtgt ggcaaatgtccactcggctatcgtgggaatggcgtcatctgcaaggatattgatgagtgt aaagaagtacctgatgcttgccacactcataacggaatccatcgctgtgagaatactgcg cctggttacaactgtttgccttgccccacacgtttctctggccttcagccctttggaaga ggagtggaacaggcaactgctaaaaaacaggtttgcatgcctcgtaacccttgccaggat ggtagccataactgcaataaaaatgcaaaatgcatctacttgggtgtctactccgagtcc atgttccgctgcgagtgcaagccaggatacgccgggaatggccggatctgtggcgaggat actgacctggatggatggcccaacactgacctgctgtgtgtggagaatgctacctaccac tgcaagaaggataactgccccaaccttcccaactctggtcaggaagaccatgacaaagat ggcctgggtgatgaatgtgaccatgatgatgacaatgatgggatccccgatgatagggac aactgcccaagagtgtacaaccctgcccagtacgacgcagacagggatgatgttggcgac agttgtgacaactgtgtttttgaggccaatgccgaccaaaccgacactgacaacaatgga gagggtgatgcctgtgctgtggacattgatggcgatggcattctgaatgagaacgacaac tgcccttatgtttacaatgtggaccagagagatactgatagggatggtgtgggagaccat tgtgacaactgccctctggagcacaatcctgatcagatcgactctgactcagatctcata ggagacaagtgcgacaacaaccaggacattgacgaggatggtcaccagaacaacttggac aactgcccctatatccctaatgccaaccaggcggaccatgacaaggatggcaagggtgac gcctgcgaccatgacgacgacaatgacggcatacccgatgacaaagacaactgtcgactg gcctttaaccccgatcaactggattctgatggtgatggccgtggtgatgtttgcaaagac gattttgatcaagacaatgttctggacatctatgacgtgtgtccggaaaactttgccatc agcgaaacagacttccgcagattccagatggttcctctggaccctaagggtacctcccag attgatcccaactgggtggtccggcatcagggcaaagagttggtccagacagtcaactgt gatcctggcattgctgttggttatgatgagttcagtgcagtggatttcagcggaacattc ttcatcaacacggacagagatgatgattatgctgggtttgtgtttggctaccagtccagc tcgcgcttctacacggtcatgtggaagcagatcacgcagacctactggtcccacacaccc acaagagctcaaggctactctggcctgtcaatcaaagtggtcaactccaccactggccct ggtgagcacctgaggaatgccttgtggcacaccggtgacacctcaggacaggttcgcact ctgtggcacgaccccaagaacattggctggaaggacttcactgcctacaggtggcacctg atccatagacccaagactggacttatcagagtggtcatgtatgaaggcaagagaatcatg gccgattctggaaacatctttgacaagacatacgctggtgggcgactaggcttgtacgtc ttctctcaggagatggtttatttctcagacctaaaatatgaatgcagagatacataa

Paralichthys olivaceus (Japanese flounder): 109636170 Help Entry 109636170         CDS       T06037                                  Definition (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism pov  Paralichthys olivaceus (Japanese flounder) Pathway pov04115   p53 signaling pathway pov04145   Phagosome pov04350   TGF-beta signaling pathway pov04510   Focal adhesion pov04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:pov00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109636170   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109636170  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109636170   09143 Cell growth and death    04115 p53 signaling pathway     109636170   09144 Cellular community - eukaryotes    04510 Focal adhesion     109636170  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pov04131]     109636170   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pov00536]     109636170    04990 Domain-containing proteins not elsewhere classified [BR:pov04990]     109636170 Membrane trafficking [BR:pov04131]  Endocytosis   Phagocytosis    Opsonins     109636170 Glycosaminoglycan binding proteins [BR:pov00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109636170 Domain-containing proteins not elsewhere classified [BR:pov04990]  Thrombospondin domain-containing proteins   Thrombospondins    109636170 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_CA EGF_3 TSP1_ADAMTS Laminin_G_3 cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  109636170 NCBI-ProteinID:  XP_019953313 LinkDB All DBs Position Unknown AA seq 1169 aa AA seqDB search MKLTGIFLLLMVWSCEAARVAESRDDNSVHDLFDLIQVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKKDGSGPVFEIVS NGKANTLDIVFSTENKQQVVSIEDVDLATGHWRNITLFVQEDRAVLYAGCDEVNTAELEA PIQSILTHETPASAQLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSITSDTM ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVGMFKELKSLGVVVKELSNELRQLTD ENKLIKSHIDIHSGVCIHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLISCANAT IPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGGWSHWSPWSSCSVTCGSGVITHIRLCNSPNPQLGGKDCVGEGRQT EKCQMDPCPINGNWGPWSPWDTCSLTCGGGVQTRKRLCNDPAPKYGGKECVGEAKVTQIC NKKACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYSGNGIKCKDVDECQEVPDACFE FNGVHRCENTEPGYNCLPCPPRYSGPQPFGRGVEHAAAHKQVCTPRNPCLDGSHDCNKNA RCNYLGHFADPMYRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFIFNPRQYDYDRDDVGDRCDNCPYDS NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND GIPDDKDNCRLAFNPDQLDTDGDGRGDACKDDFDQDNVPDIYDVCPENFGISETDFRQFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADTGSIYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagctcacggggatatttttgttgttgatggtttggagctgcgaggctgcgagagtc gcagagagcagagacgacaatagcgtgcacgacttgtttgatctcatccaagtccccaag aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctcatcgactcc atccacgccgagagaggattcctcctgctgctcaacttcaagcagttcaagcggacccgg gggagcctcctgaccgtggagaagaaggacggctccggacccgtgtttgagatcgtctcc aacggcaaggcgaacaccttggacatagttttctccaccgagaacaagcagcaggtggtg tccatcgaggatgtggatctggccacgggtcactggaggaacatcaccctgttcgtgcag gaggaccgggcggtgctgtacgcgggatgcgacgaggtgaacaccgcggagctggaagcg cccatccagagcatcctgacgcacgagactccggccagcgcgcagctccggattgggaag ggagcggtgaaggacaggttcatgggggtcctacaaaatgtgcgctttgtgtttggaaca actctcgatgccatcctccgcaacaaaggatgccaaaactccataacatctgacaccatg atcctggagaacctgaatggttcctcagccataagaacagagtacactggacataagacc aaagacctgcagatggtctgtggcttctcctgtgaggacttggtcggcatgtttaaggag ctgaagagcctcggtgtggtggtgaaggagctttccaatgagctccgacagctgacggat gaaaacaaactgataaaatcccacatcgacattcacagtggcgtctgcatccacaacggc atcgtgcacaagaacaaagacgagtggaccgtcgacgactgcaccgagtgcacttgtcag aactctgctactgtgtgccgcaagatctcctgccccctgatctcctgtgccaacgctact attcctgatggagagtgctgcccccgctgtggaacaccgagtgactatgcagaagacggc tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag cgtgggcgctcctgcgaccgtatcaataacaactgtgagggcacctcagtgcagacccgt gactgctacctccaggagtgtgacaaacgcttcaagcaggacggtggttggagccactgg tcaccctggtcttcctgctccgtcacctgtggttctggtgtcatcacccacatccgcctc tgcaactcccccaaccctcaacttggcggcaaagactgcgtgggagagggcagacaaaca gagaaatgtcagatggatccgtgccccatcaatggcaactgggggccgtggtcaccatgg gacacatgcagtcttacctgtggaggtggtgtccagactcgtaaacgcctgtgcaatgac cctgcaccaaagtacggtggcaaagagtgtgttggtgaagccaaagtcacccagatatgc aacaagaaagcctgccccatcgatgggtgtctgtccaatccctgctttgctggagcaaaa tgcaccagtttccctgatggttcttggaaatgtggcaagtgtccagctggttacagcggc aacggtatcaagtgcaaagatgtcgatgagtgccaagaggtgccagacgcttgctttgag tttaatggtgtccatcgctgtgagaatacagaaccaggctacaactgtctgccctgccct cctcgctactcaggaccccagccctttggcagaggtgtggagcatgctgcagctcacaaa caggtgtgcacaccccgtaatccctgcctcgatggaagccatgactgtaataaaaacgcc cgctgcaactaccttggacacttcgccgatcccatgtaccgctgcgagtgtaggcccggt tatgctggcaatggccatatctgtggagaggacacggacctcgatgggtggcccaacgct gacttggtttgtgtggagaatgccacctaccactgcaaaaaggacaactgccccaacctc cccaactctgggcaggaagattacgataaggacggcattggagatgcttgtgacaatgat gatgacaatgatggcattcctgacgatagggacaactgtccattcatcttcaaccccagg cagtacgattatgatcgtgatgatgtgggtgaccgctgtgataactgcccctatgacagt aatccagaccagacagacacagacaacaatggagagggagatgcctgtgctgtggacatc gatggagatggtatattaaatgagaaggacaactgtccttatgtgtacaacgtcgaccaa agagacacagatctggacggagttggagacatgtgtgataactgcccgctggaacataat cctgatcaggtggattcagacgatgaccgtgtgggagacaagtgtgacagcaaccaggac attgatgaggacggacatcagaacaatctagacaactgcccgtacatccccaatgccaat caggctgaccatgacaaggacggcaagggagacgcctgtgaccacgatgatgacaatgat ggcatccctgatgataaggacaactgcagactggccttcaaccctgaccaactggacact gatggtgatggccgtggtgatgcttgcaaagatgacttcgaccaagacaacgtgcctgac atctatgacgtgtgtcccgaaaactttggcatcagcgagacagacttccgccagttccag atggttcctttggatcccaaaggcacctcccagattgatcctaattgggttgtgcgccat cagggcaaagagctcgtccagactgtcaactgcgaccctggcattgctgttgggtaccat gagtttaatgcagtggacttcagtgggaccttcttcatcaacacagagagggatgatgac tatgccggctttgtgtttggctaccagtccagttccaggttctatgtggtgatgtggaag cagattacgcagacctactggtcaaataaacccaccaaggcccaggggtactccggcctg tccattaaagtggttaattccactactggtcctggagagcacctccgaaacgccctctgg cacaccgggaatacccctggacaggtccgcaccctatggcatgacccaaagaatgttgga tggaaagacttcactgcctacagatggcatctgatccacagaccaagaacaggacatatt agagttgtgatgtacgagggcaagaagatcatggcagatactggtagcatctatgacaag acatacgcaggtggcaggctaggtctttttgtcttctcacaagagatggtatacttttca gacctcaagtatgaatgcagagatgcataa

DBGET integrated database retrieval system