Paralichthys olivaceus (Japanese flounder): 109637274
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Entry
109637274 CDS
T06037
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03420
Nucleotide excision repair
pov04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109637274 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
109637274 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pov04121
]
109637274 (ddb1)
03400 DNA repair and recombination proteins [BR:
pov03400
]
109637274 (ddb1)
Ubiquitin system [BR:
pov04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
109637274 (ddb1)
DNA repair and recombination proteins [BR:
pov03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
109637274 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
109637274 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Beta_propel
Motif
Other DBs
NCBI-GeneID:
109637274
NCBI-ProteinID:
XP_019955080
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEAGAESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacagcgcagaaacccacggcggtgaacgcctgcatcacc
ggtcacttcacctctgcagaagatctcaatctgctcatagccaaaaacacacggttggag
atctatgtggtcacaccagaggggctgaggcccgtcaaggaagtgggcatgtatggaaag
atcgctgtcatggagctcttccggcccaagggtgaaagcaaagacctgctgtttattctc
acatccaagtacaacgcctgcatcctagaatacaagcagaacggggagagcattgacatc
atcacacgtgcccacggaaatgtccaggatcgtattggacgtccgtctgagaccggtatc
atcggaattgtcgacccagaatgccgcatgattggtctgcggctttatgacgggctgttc
aaggtgatcccactggaccgggacaaccgtgagctcaaggccttcaacatcagactggag
gagctgcaggtcatcgatgtgcacttcctgtacggctgccaagctccaactgtctgcttc
atctaccaggacccccagggacgccatgtgaagacctatgaggtttctctgagggagaag
gagttcaacaagggcccctggaaacaggagaacgtggaggctgaggcatcaatggtcatc
ccagtgccagagccatttggtggcgctataatcataggacaggaatccatcacctaccac
aatggagacaaatacttggccattgctcctcctactatcaagcaaagcaccatcgtctgt
cacaaccgagtggaccccaatggttcgcgctacctgctgggggacatggagggacgtctg
ttcatgctgctgctggaaaaagaggagctcatggacggcacggtggcgttaaaagacctg
cacgtggagcttctcggcgagacgtctattgctgagtgtttgacctacttggacaatggt
gtggtgttcgtaggctccagactgggcgactcacagttagtgaagctcaacgtcgacagc
aatgaccaaggctcgtatgtggcggtgatggagacgttcaccaatttggggcccatcgtt
gacatgtgtgttgtagacctggagaggcaaggccagggtcagctggtgacatgctcaggt
gcattcaaggagggctctcttcggattatccgcaacggcattgggattcatgagcacgcc
agcattgacctgccgggaatcaaaggtttgtggccgctccgctctgaggctggtagagag
acagatgacatgctggtgctgtcttttgtgggtcaaacacgagtgttgatgctgagtggt
gaggaagtggaggaaacagaacttccgggctttgtggacaaccagcagacgttctactgt
ggcaacgtggcgcaccagcaactcattcagatcacgtcaggctccgtgcgcctggtgctc
caggagagcaaggcattagtgagcgaatggaaggaaccacagggcaggaacatcagcgtg
gccgcctgcaaccacacacaggtggtgcttgccgtgggacgggccctctactacctgcag
atcctggctggggagctcaagcagatcagcaccacggagatggagcacgaggtggcctgc
ctggacatcacacctctgggggaggccggcgctgagtcaccgctgtgcgccgtgggtctc
tggacagacatctcagcccgtgtgctcaaacttccctgcttcacagctctgcacaaggaa
atgctgggaggagagatcatcccgcgttcaatcctaatgaccaccttcgaaggcagctac
taccttctctgtgccctgggagacggagcgctcttctactttggtctcgacctgcagacg
ggtgctctgagcgagcgcaagaaggtcaccctcggcacccagcccacagtgctcaggacc
ttcagatccctgtcgacctccaacgtgttcgcctgctccgaccgacccaccgtcatctac
tcctccaaccacaagctcgtcttctccaacgtcaacctgaaggaggtcaactacatgtgc
ccactcaactccgagggctaccctgacagtctggctctggccaacaacagcactctgacc
atcggaaccatcgacgagattcagaaactccacatccgcactgttcccctctacgagtct
cccaggcggatctgctaccaggaggtttcccagtgttttggagttctgtccagccgggtg
gagattcaggatgtgagcggcaccacatctgccgtgcggcccagtgcgagcactcaggct
ctctccagcagcgtgagctccagcaagctcttccccagcagcacctctccccacgagacc
tcctttggtgaagaggtggaggtccacagtctgctcgtggtggatcagcacacctttgaa
gttctccatgcccatcagttcctccccagtgagtatgccctcagcatggtgtcatgccgt
ctgggaaaagacccgtcagtgtattttattgtcggcaccgccatggtgtacccagaggag
gccgagcccaagcagggacgcatcatcgtcttccactacaccgatggtaagctgcagacc
gtggcagagaaggaggtgaaaggagccgtgtattctatggtggagttcaatggcaaactg
ctggccagcatcaatagcacagtgcggttgtacgagtggacggccgagaaggagctgagg
acggagtgtaaccactacaacaacatcatggccctttacctgaaaaccaagggagacttc
atcctggtgggagacctgatgaggtccgtcctgctgctggcgtacaaacccatggaggga
aactttgaggagatcgctcgtgacttcaatcccaactggatgagcgcggtcgaaatcctg
gatgacgacaacttcctgggggcagagaacgccttcaacctgtttgtctgccagaaggac
agtgcggccaccacagacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagtttgtcaatgtcttctgccacggctcactggtgctgcagaacctgggcgagagc
tccacgcccacccagggctctgtgctctttggcaccgttaacggcatgattggtttggtg
acctccctgtccgagggctggtacagtctcctcctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacaccgagcgc
aagacagagcaggccacgggattcatcgacggggatctgattgaaagtttcctggacctg
ggccgggctaagatgcaggaggtcgtcagtactctacagatcgatgacggcagcggcatg
aaacgtgaggccacggtggacgaggtcattaagatcgtggaggagctgacgaggatccac
taa
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integrated database retrieval system
