Paralichthys olivaceus (Japanese flounder): 109643337
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Entry
109643337 CDS
T06037
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04510
Focal adhesion
pov04512
ECM-receptor interaction
pov04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109643337
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109643337
09142 Cell motility
04820 Cytoskeleton in muscle cells
109643337
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pov04147
]
109643337
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109643337
Exosome [BR:
pov04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109643337
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109643337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109643337
NCBI-ProteinID:
XP_019963980
LinkDB
All DBs
Position
Unknown
AA seq
1689 aa
AA seq
DB search
MRPRLCSSVSGRMEPPGGLRRSIVPLLVLLLCCCGAAEHRVCHCSGKSLCHCDGVKGQKG
EAGNLGELGLPGMIGYPGNEGHQGSSGEKGELGAAGSPGLKGSRGLPGKPGFPGPPGLPG
LPGHDGSIGQPGFPGCNGTKGDVGYRGLPGVPGAVGFQGRPGQRGTKGDSFVHPVHQDIK
GTMGQQGPKGEKGLRGNLGQLGLPGPPGPAGRPGIPGLPGLLGEKGQEGPSPVIPGSQGQ
KGDRGPPGIPGQKGIKLYAEGPKELKGEPGEVGEKGCCGLYGEPGKEGVKGEKGEQGDPG
SLGKPGKDGLFGKLGDPGDSGDPGFFGPPGIKGAKGETGDRGLPGLPGEMVWNHIFLKGQ
PGVSGTQGPPGAPGERGIIGFPGLKGKSGVAPTGPLGPQGPPGLTGPKGEPGEPGPLFIG
PPGETGVPGVPGAEGEPGEPGKPDFLPGDVGPPGARGVKGLVGLPGTRGEEGQMGEKGET
CSVCPVAFGSPGPPGRPGEPGEPGVTGVNGFPGPEGDKGVKGVRGPPGPQGPFGFPGFPG
SPGPVGEPGIMHRVGENGEEGAPGGSGPSGLEGTYGTDGVPGPKGVVGQKGNPGPLGQKG
DRGPLGETGSRGIIGQRGPPGPPGIGIPGPPGPKGHVGVLGQRGIPGRQGEKGSPGETKT
SPGDPGKKGEKGLSGNPGPEGVTGPPGDPGSAGPKGEKGEKGFSVQGPPGFPGVKGVKGP
PGAPGLSSFGIKGRAGPSGPPGMPGPKGDRAIGFPGQQGQPGPQGEDGSVGSQGEPGLQG
VDGVPGPPGQDGLPGPNGCSGLNGVPGPVGFVGLCLEGAPGPEGQEGQMGVIGFTGARGT
KGVQGDPGLPGVGSLGPQGEYGTPGFDGPQGPVGGIGLKGLRGTNGEPGGPGIRGDMGPP
GLLGPPGDDGKPGETGRPGPKGQMGLDGVRGSQGPQGPQGDRGETGPKGLQTSVETHGDL
GDAGEPGPIGFTGTKGERGLPGPQGPDGSNGAPGDIGPQGLPGDPGRDGQMVPPGPSGLP
GNPGEMGRPGFKGEKGSTGPCGEPGSDGKPGSGGPEGAKGEPSPPGPGSKGCPGEKGIPG
CPGLLGTKGTPGDSGNSGLPGVCGPCGPKGDSGPPGCRGPPGSLGEKGNDGSSGTTGPPG
PSGLPGNKGAPGDPGPAGPRGNQGQDGIPGPPGEKGAMGAPGFGPRGPEGEKGPPGSYGE
KGLPGPCGPPGSSGPGGNPGCPGPPGLPGPPGYPGQEGICTAGLKGEEGVSGAQGPNGPP
GCQGPPGPPGPGNKGEKGAKGATGDPGLPGYPGDPGPRGKPGEDGPLGLPGQKGETGETG
IKGPVGLKGDEGPQGNAGSKGPPGPPGRRGTRGKDASREVNLILGDEGSTGDQGPPGQNG
PPGARGRHGIPGVKGTKGKEGNQGSRGRPGLKGDQGGRGFPGLKGIAGPRGPVGAKGSPG
PLGPCGEAPERDGFLFTRHSQNLFVPSCPAGSSEVYSGYSLLFINGNNRAHGQDLGTLGS
CLPLFTTMPFLFCNTDSTCRYASRNDYSYWLSTNETLPGSVPFISGQLLESYISRCTVCE
AQANVIAIHSQTTLVPDCPSGWDHLWFGFSFVMETGVGAEGSGQPLASPGSCLENFRKIP
FIECHGRGTCNYYTDSYSYWLAALNPRDMFRFCSERPLEVQYRLLPQEDRHEAQQEQISC
AALPLTATW
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgagactctgcagctctgtgtccggacgtatggagcctccaggcggcctgagg
cggagcatcgtcccgctgctggttctacttctctgctgctgtggagccgctgaacacagg
gtgtgtcactgcagtgggaagtcgttgtgtcactgtgacggggtcaaaggtcaaaagggt
gaagctggtaaccttggagaacttggacttcctggaatgattggttaccctggaaacgag
ggtcaccaggggtcatcaggagagaagggtgagctgggagcagcaggaagtccaggactg
aaaggctcacggggtcttccagggaaaccaggttttccaggacctcctgggctgccggga
cttcctggacatgacggatcaattggccaaccaggtttcccaggatgcaatgggacaaag
ggggacgttgggtacagaggactccctggagttccaggagctgttggctttcaaggtcga
ccaggacagcgaggcacaaagggcgactcgttcgtccaccccgtccatcaagatattaag
ggaacaatgggtcaacaaggaccaaagggtgaaaaggggcttcggggaaatcttggtcaa
cttggacttccaggaccaccaggacctgctggacgtcctggcattccagggttgcctggg
ttactaggagaaaagggtcaggagggtcctagtccagtgatcccaggttcccaaggacaa
aagggtgatcgtggacctcctgggattcctggacagaaaggaatcaaactgtacgctgag
ggacccaaagagctgaagggagaaccaggtgaagtcggagagaaaggctgttgtggactt
tatggtgaacctgggaaagaaggggtgaagggagagaagggtgagcaaggtgacccaggc
tcactgggtaaaccgggaaaagatggactcttcggaaaactcggagatccgggagactcg
ggggatccagggttcttcggtcctccaggtattaaaggagccaagggggagacaggtgat
cgtggacttccaggtcttccaggagagatggtttggaatcacatattcctgaagggtcag
cctggtgtctcagggacccaaggaccccctggagcccctggagaaagaggaatcattggt
tttcctggactgaaggggaagtcaggtgtggctcctactgggcctctgggcccccagggg
ccacctggtttgactggaccaaaaggagaaccaggagagccgggacccctcttcattggg
cccccaggagagactggagtcccaggagtcccaggagctgaaggagaaccaggagaacca
ggaaaaccagatttcctgccgggagacgtcggtcctccaggagctagaggcgtgaaaggc
ctagtgggacttcctgggaccagaggggaggagggacagatgggtgagaagggagagaca
tgctccgtctgtcctgttgctttcggatcccccgggcccccaggtagaccaggagagcca
ggtgaacctggggtgacaggtgtgaatggttttccaggacctgaaggtgacaaaggggtc
aaaggagttcgaggaccacctggtccacagggaccctttggttttcccggcttcccgggg
tccccaggacctgttggtgagccagggatcatgcacagggtgggggagaatggggaggaa
ggggcccctgggggctcaggaccatcaggtcttgaggggacatatggaactgacggagtc
cctggaccgaaaggtgttgtgggacagaaaggaaaccctgggcctctgggtcagaaaggt
gacaggggcccactcggggagaccggctccagaggaattatagggcagagaggacctcca
ggacctcctggtatcggcattccaggacctccaggacctaaaggccatgtgggagttttg
ggacagcgagggattcctggaagacaaggtgaaaaaggttctccaggtgaaaccaagact
tctccaggtgatccaggaaagaaaggagagaaagggttatcaggaaatccaggacctgaa
ggtgtgacgggacctccaggtgatcctggatctgctggtccaaagggagaaaaaggagag
aaagggttttctgtgcaggggcccccagggttcccaggagtgaaaggcgtgaagggccct
ccaggtgccccaggtttatcgagttttggaatcaagggacgagcggggccatctggtcca
cctgggatgccagggccaaagggggacagagctatcggtttcccaggacagcagggtcag
ccaggccctcagggagaagatggctccgtgggttcccaaggagaacccggactccaagga
gtcgatggagttccaggacctccgggacaagatggactaccagggcccaatggttgtagt
ggtctgaatggtgtacctggtcctgttggctttgttggactatgtttagagggggctcct
ggacctgagggacaggaaggacagatgggtgtcattggatttacaggggcccgaggcaca
aaaggggtacagggtgaccctgggctgccaggtgtgggatccctggggcctcagggggaa
tacgggactccagggtttgatggacctcaagggccagtcggaggtatcggactgaagggc
ctgagagggaccaacggggagccaggaggcccaggtatcagaggggacatgggtcctcca
ggacttcttgggcctccaggggatgatgggaaaccaggagagacggggcgaccaggacca
aaaggtcagatgggattagatggggtcaggggttctcaggggcctcaagggcctcaaggg
gacagaggggagaccggacctaaaggactccaaacttctgttgagacacatggagacctg
ggagatgctggagaaccagggcccataggtttcactggtactaaaggagagaggggcctc
cctggacctcagggcccggacggcagcaatggtgcacctggagacattggaccacaagga
cttcctggagaccctggcagagatggacagatggttcctcctggtcccagtggtctccct
ggtaacccaggggagatggggaggccaggttttaaaggtgagaaaggttctacaggccct
tgtggagaacctggctcagatggaaaaccaggatcaggaggtcctgaaggtgctaaagga
gaaccaagtccacctggacctggatctaaaggatgtccaggagagaaggggattccaggg
tgtccaggacttttaggtacaaaggggacaccaggagactctgggaactctggtcttcca
ggagtatgtggcccctgtggccctaaaggagactctgggcccccaggatgcagaggtcct
cctggatctcttggtgagaagggtaatgatggttcttcagggacaactggacctccagga
cccagcggtctcccaggtaacaagggggctcctggagatcctggtccagctggtcccaga
ggaaaccagggacaagatgggatacctgggcctccaggagagaaaggagccatgggagct
cctggatttggaccccgtggcccagaaggagagaaaggtccacctggctcttatggtgag
aagggccttccaggtccgtgtggccctcctggttccagtggtcctgggggaaatccaggt
tgccctggtccccctggactccctggtcctcctggctatcctggacaggagggtatctgc
actgcaggactaaaaggagaagagggagtctctggagcacaagggccaaatggtcctccc
ggctgtcagggtcctccaggtcctccaggtcctggtaataaaggagagaagggagctaaa
ggagcaacaggtgacccaggattacctggttatcctggcgaccctggtccaagaggaaag
ccgggtgaagacggacccctgggtttacctggacagaaaggcgagaccggagaaactggt
atcaaaggacctgtgggtttaaagggagatgagggaccacaaggtaacgctggctcaaaa
ggacccccaggaccacctgggaggagaggaacaagggggaaggatgcatccagggaggtg
aacctgattctaggagacgaaggctctactggggatcagggccccccggggcaaaacgga
cccccaggagcccgtgggagacatggaatcccaggtgtgaagggtactaaagggaaggag
ggtaaccaaggatcgcgaggtcgtcctggactgaaaggggatcagggaggccgaggattc
cctggactaaaaggtattgcaggtccacgaggtccagtcggtgctaaaggtagtccaggt
ccgctgggtccctgtggggaggcgccagagagggacggcttcctgttcaccagacacagc
caaaaccttttcgtcccatcatgccctgcagggtccagtgaggtgtacagtggatactcg
ctgctgttcatcaatggaaacaaccgggctcacggacaagacctgggtacgttaggcagt
tgtctccctctcttcaccaccatgcccttcttgttctgtaacactgacagcacctgtcgc
tacgcctcacgcaacgactactcctattggctctccactaatgaaactctgccaggaagt
gtcccatttatatctgggcaacttctggaaagttacatcagccggtgtactgtatgtgag
gcccaagctaacgtgatcgccatccacagtcagaccactttggttccggactgtccctct
gggtgggatcatctctggtttggattctccttcgtgatggaaacaggtgtgggggcggag
gggtcgggtcagcctctggcttcgcctggatcctgtctggaaaacttcaggaagattccc
ttcatcgagtgtcacggcagaggaacctgcaactactacacagactcctacagctactgg
ctggctgctctcaaccccagagacatgttcagattctgctctgaacgacctctggaggtg
cagtaccgccttctgccacaggaggacaggcatgaggcacaacaggagcagatcagctgt
gctgcacttcctctaacagccacctggtga
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integrated database retrieval system