Pandoraea oxalativorans: MB84_20810
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Entry
MB84_20810 CDS
T03840
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pox
Pandoraea oxalativorans
Pathway
pox02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pox00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MB84_20810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pox03021
]
MB84_20810
Transcription machinery [BR:
pox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MB84_20810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
KIND
GSH-S_ATP
GerE
Luciferase_3H
Motif
Other DBs
NCBI-ProteinID:
AKC71379
UniProt:
A0A0E3U830
LinkDB
All DBs
Position
complement(3672686..3674674)
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AA seq
662 aa
AA seq
DB search
MNEDQTKVEKQKARDRRAKEKALLKDAFSSHQPGTAEELEERRGKLRTLIKLGKERGFLT
FAEINDHLPDDVVEGDALEGVIATFNDMGVAVYEQAPDAETLLLNDNAPNAATDDEVEEQ
AEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISACPT
TIAEILAMAEKVEREEMRIDEVVDGLIDPNAEANAAAAASDDEDFDADAEEEEEEEEEEE
GDEEEDSSNGGAASAAQVEQLKRDSLAKFAVIADWFGKMRRAFEKEGYQSKPYVKAGESI
QAELMTIRFTARTVERLCDTLRSQVDEVRNIERAILNIVVDKCGMPRADFVSRFPGNETN
LDWIYTVVADNKAYSSVVERNVPAVQELQQKLIDLQARVVLPLTELKDVNRKMSEGERRA
RKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGVEPDPATLAEKMEMPED
KIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTGTVAPADAALHGSMRDVVKDVLDSLT
PREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE
GN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaagatcagaccaaagtggaaaagcagaaggcgcgtgatcgccgggcaaaagag
aaagcactgctcaaggacgcattttcctcgcaccagcccggtacggccgaggaacttgag
gaacgtcgtggcaagctgcggacactgatcaagctgggcaaggaacgaggcttcctgacc
tttgcagagatcaacgaccacctccccgacgatgtggtcgaaggcgacgcgctggaaggc
gtgatcgcaacgtttaacgacatgggcgtggctgtctacgagcaggcacccgatgccgag
acgctgctgctcaacgacaatgccccgaacgctgcgacggacgacgaagttgaggagcaa
gcggaagcggctctctccacggtcgattcggagttcggccgcacgaccgacccggtgcgt
atgtacatgcgcgaaatgggtacggtcgagctgctgacgcgtgaaggggaaatcgagatc
gccaagcgcatcgaagaaggcctgaagcacatggtgcaggccatctccgcatgcccgacg
acgattgccgagatcctggcgatggccgagaaggtcgagcgcgaagaaatgcgtatcgac
gaagtggtcgacggcctgatcgatccgaatgcggaagccaatgcggctgccgctgcctct
gacgacgaagacttcgacgctgacgcggaagaagaagaggaagaagaggaagaggaagaa
ggcgacgaggaagaggatagcagcaacggcggcgcagcttcggcagcgcaggtcgagcag
ctcaagcgtgactcgctcgccaagttcgccgtgatcgccgactggttcggcaagatgcgt
cgtgcgttcgagaaggaaggctaccagtccaagccgtacgtgaaggctggcgagtcgatc
caggccgaactgatgacgatccgcttcacggcgcgtacggtcgagcgtctgtgcgacacg
ctgcgctcgcaagtggatgaagtgcgcaacatcgagcgtgcgatcctgaacatcgtggtc
gacaagtgcggcatgccgcgtgcggatttcgtgtcgcgtttcccgggcaacgaaaccaat
ctcgactggatctacacggtcgtggccgacaacaaggcgtatagctcggtggttgagcgt
aacgtgccggccgttcaggaattgcagcagaagctgatcgacctgcaagcgcgcgtggtg
ttgccgctgaccgagttgaaggacgtcaatcgcaagatgtcggaaggcgagcgccgtgcc
cgcaaggccaagcgcgagatgaccgaagcgaacttgcgtctggtaatttcgattgcgaag
aagtacacgaaccgtggcctgcagttcctggatctgattcaggaaggcaacatcggcctg
atgaaggcggtggacaagttcgaatatcgtcgtggttacaagttctcgacgtacgcgacg
tggtggattcgtcaggccatcacgcgttcgatcgcggaccaggcacgtaccatccgtatt
ccggtgcacatgatcgaaacgatcaacaagatgaaccggatttcgcgtcagattctgcag
gagaccggtgttgagccggatccggcgacgctggccgagaagatggaaatgccggaggac
aagatccgcaagatcatgaagatcgcgaaggaaccgatctccatggaaacgccgatcggt
gacgacgacgattcgcatttgggtgatttcattgaagataccggcacggtcgcacctgcc
gacgccgcattgcatggtagtatgcgcgacgtcgtgaaggacgtgctcgattcgctgacg
ccgcgtgaagccaaggtgctgcgcatgcgattcggtatcgagatgagcacggaccatacg
ctcgaggaagtgggcaagcagttcgacgtgacgcgcgagcgtattcgtcagatcgaagcc
aaggcgctgcgcaagctgcgtcacccgagccgttccgacaagctcaagtcgttcctcgaa
ggcaattga
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integrated database retrieval system
