Onion yellows phytoplasma OY-M: PAM_498
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Entry
PAM_498 CDS
T00154
Symbol
gyrB
Name
(GenBank) DNA gyrase beta subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
poy
Onion yellows phytoplasma OY-M
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poy03032
]
PAM_498 (gyrB)
03400 DNA repair and recombination proteins [BR:
poy03400
]
PAM_498 (gyrB)
Enzymes [BR:
poy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PAM_498 (gyrB)
DNA replication proteins [BR:
poy03032
]
Prokaryotic type
DNA Topoisomerases
PAM_498 (gyrB)
DNA repair and recombination proteins [BR:
poy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PAM_498 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BAD04583
UniProt:
Q6YQ77
LinkDB
All DBs
Position
562356..564371
Genome browser
AA seq
671 aa
AA seq
DB search
MKNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANKITLE
ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDNSSYKVSGGLHGVGASV
VNALSTWFTVEIHLNKQIYFQKYEKGIAVSPLEVIGKTNKRGTTIQFLADPEIFQETTIY
NFDTLKERMQQLSFLNKGLKLNIADKRYEKETVFNFCHEKGLQDYLDFINTSHKQTPFHE
IFYLEKEFQKLAFEIVFEYTTKIRPPKKDAQGNEIEEKEGKDAIPNYTQNQKIFSFVNNI
PTHEGGTHEEGFKLALNRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQYPQFEG
QTKAKLANTEVRQITSQLFGEFLEKYLLENPQDSRKIIDKCLLSANARLAAKRAREVVRN
KPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLNVEK
SLDAKILTNKEIKSLIQAIGAGINIGKGKDFNMDKIRYHKIIIMTDADVDGAHIRTLLLT
FFFRHFRKLIEKGYIYFARPPLYKYQKGKGAPKYFYDEKAKQTFATKNNLKDGFQRYKGL
GEMNPNQLWETTMDPETRTLLKASLKDALNALSDEEALMEADQTFNMLMGEKVLPRKNFI
LEKALEADLDV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaattacaatgccgatagtattcaaattttagaaggtttggaagcagttcgcaaa
cgaccaggaatgtatattggttcaactgctcaaaaaggacttcatcatttagtctgggaa
atcgttgataattccattgatgaagctttagcaggacacgctaacaaaattactttagaa
atcctacctggagaaattattagtgtttctgacaacggtagaggaatcccagttgatatt
caccccaaaacaggaaaaccagcagtagaaacaattctaactactcttcatgctggagga
aaatttgacaattcttcttacaaagtttcaggaggacttcatggtgtaggagcctctgtg
gtaaatgctctttctacttggtttactgtagaaattcatctcaataagcaaatctatttt
caaaaatacgaaaaaggaattgcagtttcgcctttggaagtaattggaaaaactaacaaa
cgaggaactactatccaatttttagcagaccctgaaattttccaagaaactaccatttat
aactttgatactctcaaagaaagaatgcaacaattatcttttttaaacaaaggtcttaaa
ttaaacattgctgacaaaagatacgaaaaagaaactgtttttaacttttgccatgaaaaa
ggtttgcaagactacctagatttcattaacactagtcacaaacaaactccttttcacgaa
attttttatctggaaaaagaattccaaaaactagcttttgaaattgtctttgaatacact
accaaaattcgtccccctaaaaaagatgcacaaggaaacgaaatagaagaaaaagaaggc
aaagatgctattcctaactacacccaaaaccaaaaaatcttttcttttgttaacaatatt
cctactcatgaaggaggaactcacgaagaaggctttaaactagccctaaaccgtgttatt
tctaaatatgctaaggaattcaatcttttaaaaaaagacgaacatttattaagtgaagac
atcttagaaggaattactgctattatttctttaaaacatcaataccctcaatttgaagga
caaactaaagccaaactagcaaatactgaagtaagacaaattacatcccaattatttggc
gaatttttagaaaaatatttattagaaaatccccaagattcaagaaaaataattgataaa
tgtcttctttctgcaaatgcccgtctagctgctaaacgtgctcgtgaagtagtaagaaac
aaaccccttgattctttaggttttgcctccaaattagctgattgtagaagtaaagaccct
catatttctgaactctacattgtcgaaggagattcagcgggcggttctgctaaacaagga
agagactcacgttttcaagctatccttcctttacgtggtaaagtccttaatgtagaaaaa
agtctagatgccaaaattcttaccaataaagaaattaaatccttaatacaagcaattggt
gcaggaattaacattggtaaaggcaaagactttaatatggataaaatccgttatcacaaa
attatcattatgacagatgccgatgttgatggagctcacataagaactttactattaact
ttctttttcagacatttccgtaaattaattgaaaaaggctacatctattttgctcgtcct
cctttatacaaataccaaaaaggaaaaggcgctccaaaatatttttatgatgaaaaagcc
aaacaaacttttgcaactaaaaacaacttaaaagatggtttccaaagatacaaaggactt
ggagaaatgaatcctaatcaactttgggaaacaactatggacccagaaactcgtactctt
ctcaaagcaagcctcaaagatgcccttaatgctttaagtgatgaagaagccttaatggaa
gcagaccaaacttttaacatgttaatgggagaaaaagtcttaccaagaaaaaacttcatc
ttagaaaaagccttagaagctgatttagacgtttaa
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