Pseudomonas putida BIRD-1: PPUBIRD1_1044
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Entry
PPUBIRD1_1044 CDS
T01975
Name
(GenBank) RNA polymerase sigma factor
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppb03021
]
PPUBIRD1_1044
Transcription machinery [BR:
ppb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPUBIRD1_1044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ADR58726
LinkDB
All DBs
Position
1173836..1174420
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AA seq
194 aa
AA seq
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MQRTNSQDELEAREARLKALLLRGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIED
MVQDVLLAVHNARHTYLPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAV
SEVESTEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLK
ALSRLIGGANNHED
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaactaactcacaggatgagctcgaggctcgcgaggcccgattgaaagcactg
ttgcttcgggggctgacaggcgaccagctggcctatcaggattttcttggcacgcttgcg
ctgcatgtacgtgcgtttctgcgcagccgtctgagcaggcgcccggccgagatagaggac
atggtgcaggatgtgctgctggcggtacataacgcgcgccacacttacctgccgcagcag
cctttgactgcttgggtgcaggcgatcgcccgttacaagctggcggatcatctgcgaagt
gtttcacgtcgcgacgcccggcatgatgtgctggatgatgatgcgcaactgtttgccgtc
tcggaggttgaatcaaccgaggccagccgagacctgaccaagttgctcaagcaactgcca
gagcggcaacgactgccgattgttcatgtcaagctggaggggttgtctgtcgaagagacg
gcacaacttaccgggctttccagttcagcggtaaaggttgggatacatcgaggtctgaaa
gcgctatccaggctgattggaggagccaacaaccatgaagactga
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