Pseudomonas putida BIRD-1: PPUBIRD1_1384
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Entry
PPUBIRD1_1384 CDS
T01975
Symbol
recQ
Name
(GenBank) RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPUBIRD1_1384 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppb03019
]
PPUBIRD1_1384 (recQ)
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_1384 (recQ)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPUBIRD1_1384 (recQ)
Messenger RNA biogenesis [BR:
ppb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPUBIRD1_1384 (recQ)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPUBIRD1_1384 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
GerE
HTH_23
ResIII
HTH_29
HTH_28
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
ADR59059
LinkDB
All DBs
Position
1546217..1548376
Genome browser
AA seq
719 aa
AA seq
DB search
MELHMLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLR
PGLTVVVSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPE
RLVQPRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATA
DMRTREEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCL
SRKKVDETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPN
VRFVAHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRI
EQHKLDAMLALCEETRCRRQTLLAYFDETLEQPCGHCDNCVDNIQTWDATEPARQALSAV
FRTGQRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVD
IDLEGYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLW
EALRTLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFL
EVLNNSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQEL
SLDQAIDLPEDLMMEVQDAFLDGEGELPPVSAIAPQFGARVPEGVLYCVRAALAAEFEL
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
ttggagttgcacatgctcgaacaggctcagcgcgttctcaaggacatcttcggctacgac
agtttccgtgggcgccaggcagcgatcatcgaatgcgtggccaatggcggcgatgccttg
gtactgatgcccaccggtggcggcaaatcgctgtgtttccaggtgccggggctgctgcgc
ccgggcctgacggtggtggtatcgccactgatcgcgctgatggacgaccaggtcgccacc
cttgacgagctgggtgtatctgcggccgccctgaactctaccctgacggcggagcagcag
cgtgaactggccgggcgcttgcgccgtggtgaagtcaagatgctgtatcttgcgccggaa
cgcctggtgcagccgcgcatgctcgacttcctgcgcgatctggacatctcgctgttcgct
attgacgaggcccactgtgtatcgcaatgggggcacgatttccgcccagagtacctgcag
ctgggccagctggccgaactgtttccgcatgtaccgcgcattgcgcttaccgctacagcc
gacatgcgaacccgcgaggagatcgttcagcgcctgcacctgcaaggcgccgagcgcttc
ctgtcgagtttcgaccggcccaacatcttctaccgcatcgtgcccaaggaggcaccgcgc
aagcagttgatggccttcctcggcgaacgtcgtggcaacgcaggcatcgtctactgcctg
tcgcgcaagaaggtcgacgaaaccgccgccttcctctgcagtcagggtttccctgcgctg
ccgtatcacgccggcctggccgccgagacacgtgcggccaaccagcaccgctttctcaac
gaggaagggctgatcatggtcgctaccattgctttcggcatgggtatcgacaagcccaac
gtgcgtttcgttgctcacctcgacctgcccaagtcgcttgaagcctactaccaggaaacc
ggccgggccggccgtgacggcctgccctccgatgcctggatggcctacgggctgcaggac
atggtgatgctcaagcagatgctgcagaactccgaaggcgacgagcgccacaagcgcatc
gagcagcacaagctggacgccatgctggcgctgtgcgaagaaacgcgctgccgccgccag
acgctgctggcctacttcgacgaaaccctcgaacaaccgtgcgggcactgcgacaactgt
gtcgacaacatccagacctgggacgccaccgagccggcccgccaggcgctgtcggcggtg
ttccgcaccggccagcgctatggtgttggccacctggtcgatgtgctgttgggcaaggac
accgagaaggtgcgcaatttcggccacgagaagctgtcggtattcggcgttggcaaaggc
ttggccgaggtggagtggcgctcgctgttccgtcagttggtggcgcgcgggctggtcgat
atcgacctggaaggctacggcggactgcgcctgtccgacagctgccggccgctgctgcgc
ggcgaggtgaccttgcaactgcgccgtgacctcaaaccgcagaccacggccaaaacctcg
tcgtccagcggcggcagcccggccagccagctggtgcgtgccgaagagcgcgatctgtgg
gaagcgctgcgtaccctgcgccgcaagctggccgaagaacacagtgtgccgccctacgtc
atcttccccgactcgacactgctggagatgctgcgcagccagccggtcagcctcagcgac
atggcccaggtcagcggtgtgggggcgcgcaagctggagcgctacggccaggcgttcctc
gaagtgctgaacaacagcggtggcaccgacgaggcaccgaaagtggtgctcgacctgcgc
catgaactggtcagcctggcccgtgccggcatgaccccggcgcagatcgccgggcagctc
aattgcagcgagaagaacgtgtatagcctgctggccgaggcgctgggccgccaggaactg
agtctggaccaggccatcgacctgccggaagacctgatgatggaggtgcaggacgccttt
cttgatggtgagggtgagctgccaccggtgtcggccattgccccgcaattcggggcgcgg
gtgccggagggcgtactctattgcgtgcgcgcagcgctggcggcggaattcgaattgtaa
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