KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_2515Help
Entry
PPUBIRD1_2515     CDS       T01975                                 

Gene name
ligD
Definition
(GenBank) LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ppb  Pseudomonas putida BIRD-1
Pathway
ppb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ppb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PPUBIRD1_2515 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppb03400]
    PPUBIRD1_2515 (ligD)
Enzymes [BR:ppb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PPUBIRD1_2515 (ligD)
DNA repair and recombination proteins [BR:ppb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PPUBIRD1_2515 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ADR60141
LinkDB All DBs
Position
2858643..2861147
Genome map
AA seq 834 aa AA seqDB search
MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDTAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQQRRDTLRQLLEHNHCDVIKYSADFD
EPVESLLDSACRLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNESGELRYAGKVGTGFNTTTLTSIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRHKQANAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVSYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARMRKQLGLER
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgcgacacccgagccc
agcggcaaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcctggcagtgcatgtggag
gaccatccgttggactacgccgatttcgaggggcatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tacgccaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacacacctggctggcaagaaagaacaatggatgttggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgccagacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgataaagttcaggctgcacccttgccagcacagctacagccacag
ctggcaacgttggtggattctccaccgagcggcgactggcgctacgaagtcaagttcgat
ggctaccgcattctggcccgcatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccgtcaggttgccgccctgcgcgcgctcggtatcgac
acggcttggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaatgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaacgccgcgatacg
ttgcgccaactgcttgagcacaaccattgcgacgtcatcaagtattccgccgacttcgac
gaacctgtcgagtcgctactcgacagtgcctgccggctgaagctggaaggcctgattggc
aagcgtgctgacagtgtttacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaagaattcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggc
ttcggtgccctgctgctggccctgcacgacaatgagagtggcgagctgcgctatgccggc
aaggttggtaccggcttcaacaccacgacactgaccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgccacaagcaggccaatgcgtct
gagaatctgggtgaactgcggctgacccaccctgaccgggtcatcgatcccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccccag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtactcagttatgaaaaggccgag
gcaggccaggcggcgatggtcatcaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggagctgcacacctggaacgccacggacaaggatttcgacaaaccggaccgt
tttgtcctcgacctggaccctgaccctgcgctgccttggaaggcgatggtggaggcgacc
caactggccctcaccctgctggacgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgcgccggctgggacgaagtcaag
gacttcagccacgccatcgtcagttacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaaagatga

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