Pseudomonas putida BIRD-1: PPUBIRD1_3839
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Entry
PPUBIRD1_3839 CDS
T01975
Symbol
ihfB
Name
(GenBank) IhfB
KO
K05788
integration host factor subunit beta
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppb03032
]
PPUBIRD1_3839 (ihfB)
03036 Chromosome and associated proteins [BR:
ppb03036
]
PPUBIRD1_3839 (ihfB)
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_3839 (ihfB)
DNA replication proteins [BR:
ppb03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PPUBIRD1_3839 (ihfB)
Chromosome and associated proteins [BR:
ppb03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
PPUBIRD1_3839 (ihfB)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
PPUBIRD1_3839 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ADR61426
LinkDB
All DBs
Position
complement(4304332..4304634)
Genome browser
AA seq
100 aa
AA seq
DB search
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV
GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEDEHEEAHT
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagtcggagctgatcgaacgtattgtcacccatcaggggctgctctcgtccaag
gatgtggagctggccatcaagaccatgcttgagcagatgtcgcaatgcctggctaccggc
gatcgcatcgagatccgcggttttggcagcttctcgctgcactatcgcgcccctcgcgta
ggccgtaacccgaagaccggccagtcggtcagcctcgaaggcaagttcgtgccgcacttc
aagcccggcaaagagttgcgtgaccgggtcaatgaagacgagcatgaagaggcccacacc
tga
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