KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_4689
Entry
PPUBIRD1_4689     CDS       T01975                                 
Symbol
orn
Name
(GenBank) Orn
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
ppb  Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:ppb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppb03019]
    PPUBIRD1_4689 (orn)
   03009 Ribosome biogenesis [BR:ppb03009]
    PPUBIRD1_4689 (orn)
Messenger RNA biogenesis [BR:ppb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PPUBIRD1_4689 (orn)
Ribosome biogenesis [BR:ppb03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PPUBIRD1_4689 (orn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-ProteinID: ADR62247
LinkDB
Position
complement(5231539..5232081)
AA seq 180 aa
MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEW
NTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMR
NLENYFHYRNLDVSTLKELAARWAPDVRDSFKKGNTHLALDDIRESIAELRHYREHFIKL
NT seq 543 nt   +upstreamnt  +downstreamnt
atgcaaaacccacagaacctgatctggatcgacctggaaatgaccggcctggatccggac
agcgatgtcatcatcgaaatggccaccatcgtcaccgacagcgagctcaataccttggcc
gaagggccggtgatcgccatccaccacagtgacgaagtgctggcgcgcatggacgagtgg
aacacccgcacccatggtgcttcggggctgacccagcgcgtacgcgagagcaaggtcagc
atggctgaagccgaggcacagaccatcgccttcctcgagcagtgggtgcctaaaggcaag
tcgccgatctgcggcaacagcatctgccaggatcgtcgtttcctctaccgccacatgcgc
aacctggaaaactacttccactaccgcaacctggatgtctccaccctcaaggaactggcc
gcgcgctgggcgccggacgtgcgtgacagcttcaagaagggcaatacccacctggcgctg
gacgatatccgcgaatcgatcgccgaactgcgtcactatcgcgagcacttcatcaagctg
tga

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