Pseudomonas putida BIRD-1: PPUBIRD1_4689
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Entry
PPUBIRD1_4689 CDS
T01975
Symbol
orn
Name
(GenBank) Orn
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ppb
Pseudomonas putida BIRD-1
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppb03019
]
PPUBIRD1_4689 (orn)
03009 Ribosome biogenesis [BR:
ppb03009
]
PPUBIRD1_4689 (orn)
Messenger RNA biogenesis [BR:
ppb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPUBIRD1_4689 (orn)
Ribosome biogenesis [BR:
ppb03009
]
Eukaryotic type
Pre-60S particles
RNases
PPUBIRD1_4689 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ADR62247
LinkDB
All DBs
Position
complement(5231539..5232081)
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AA seq
180 aa
AA seq
DB search
MQNPQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEW
NTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMR
NLENYFHYRNLDVSTLKELAARWAPDVRDSFKKGNTHLALDDIRESIAELRHYREHFIKL
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccacagaacctgatctggatcgacctggaaatgaccggcctggatccggac
agcgatgtcatcatcgaaatggccaccatcgtcaccgacagcgagctcaataccttggcc
gaagggccggtgatcgccatccaccacagtgacgaagtgctggcgcgcatggacgagtgg
aacacccgcacccatggtgcttcggggctgacccagcgcgtacgcgagagcaaggtcagc
atggctgaagccgaggcacagaccatcgccttcctcgagcagtgggtgcctaaaggcaag
tcgccgatctgcggcaacagcatctgccaggatcgtcgtttcctctaccgccacatgcgc
aacctggaaaactacttccactaccgcaacctggatgtctccaccctcaaggaactggcc
gcgcgctgggcgccggacgtgcgtgacagcttcaagaagggcaatacccacctggcgctg
gacgatatccgcgaatcgatcgccgaactgcgtcactatcgcgagcacttcatcaagctg
tga
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integrated database retrieval system