Pediococcus pentosaceus ATCC 25745: PEPE_0448
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Entry
PEPE_0448 CDS
T00409
Definition
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEPE_0448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_0448
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEPE_0448
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEPE_0448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_7
AAA_19
AAA
T2SSE
DUF2252
Kinesin
UB2H
AAA_16
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABJ67544
UniProt:
Q03GX8
LinkDB
All DBs
Position
497678..499681
Genome map
AA seq
667 aa
AA seq
DB search
MIKRENDREFELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQK
VNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
NDEIDELRHSATSSLLERNDVIVVASVSSIFGLGDPREYQDQALTLRVGQEIDRNKLLRE
LVDIQYDRNDIDFQRGRFRVHGDVVEIFPAANDAHSIRVEFFGDEIDRMREMDALTGEII
GDRDHITIFPATHFMTNEDRMEHAIKNIEAELKDRLEELDGEGKLLEAQRLRQRTTYDIE
MLKEMGYTNGIENYSRHMDGRKPGEAPYTLLDFFPDDFLLVVDESHVTMPQVRGMYNGDR
ARKQQLVDYGFRLPSALDNRPLKLEEFEKHINQVVYMSATPGDYENERTNNVVQQIIRPT
GLLDPIIEVRPIMGQMDDLLGEINQRIEKDERVFVTTLTKKMAEDLTDYLKDMGIKVAYL
HSDIKTLERTRIIRDLRVGKYDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNTRSMI
QVAGRAARNENGHVIMYADHMTKSMQETIDETARRRTIQEAYNREHGITPHTIKKDIRSL
ISSTSDTEDKGKKDDFLDVDFADMDSKDQKEMIANLEDQMRAAAKKLDFEKAANLRDTVL
ELKAQIG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacgtgagaatgatcgtgaatttgaattggtttctaagtaccaaccaacgggg
gatcagccaacggcgatcaacgaattagttgacggtattaaaagtggcgagaaagaacaa
atcctgttgggtgcaacgggtaccgggaaaacttttacgatttctaacgtaattcaaaaa
gtgaataaaccaactttaattttgtcacacaataaaactttggcgggccaattatatggc
gagtttaaacagtttttcccgaataacgcggtagaatattttgttagttattatgattat
tatcagcctgaagcatacgttccatctagtgacacttatattgaaaaagactcatcaatc
aatgatgaaatcgatgagctccgccattccgctactagttcactacttgaacgcaatgat
gtgattgtggtggcttctgtttcaagtatctttggtttgggtgatcctcgagaataccaa
gatcaagccttaacacttcgagtagggcaggagattgatcgaaataagttactacgagaa
ttagttgatattcagtacgaccgtaatgatattgatttccagcgtggccgttttcgggtg
catggcgatgtagttgaaatttttccggctgctaatgatgcgcattccattcgagtagaa
ttctttggggatgaaattgatcgaatgcgtgaaatggatgccttaacgggagaaattatt
ggtgatcgagatcatattacaattttcccagcaacccattttatgactaacgaagatcga
atggaacatgcgattaagaacattgaagcggaattgaaggaccgtttggaagaattagat
ggtgagggaaaactcctagaagcgcaacgtttacgacaaagaacgacctatgatatcgag
atgttaaaagaaatgggatacaccaacgggattgaaaattattccagacatatggatggt
cgtaaaccaggtgaagcaccttatactttactagatttcttccccgatgattttctattg
gtcgtagatgaatcccacgtaactatgccacaagtacgcggtatgtacaatggggatcga
gctcgtaagcaacaattagtagattacgggtttagattgccaagtgcgttggataaccga
ccccttaaattagaagaatttgaaaaacatattaaccaagtggtttatatgtcagctacc
ccaggtgattatgaaaatgaacgaactaataacgttgttcaacagattattcgaccaact
gggttattggatccaatcatcgaagtacgcccaatcatgggccaaatggatgatttgcta
ggtgaaattaatcaacggattgaaaaagacgagcgtgtatttgtaacaactttgacgaag
aagatggccgaagatttaaccgattatctgaaagatatgggaattaaggttgcttacttg
catagtgatattaagacgctggaaagaacccgtattatccgtgatttacgggtaggcaag
tatgatgttttagtaggaatcaatttgcttcgtgaaggaattgatgttccggaagtatct
ttagtagcgattttagatgccgacaaggaaggtttccttcgaaatactcgttcgatgatt
caggtggctgggcgtgcggcacgtaatgaaaatggacacgttattatgtatgctgatcat
atgactaagtccatgcaagaaaccattgatgaaactgcacgacgtcgtacgattcaagaa
gcatataaccgtgaacatggaattactcctcatacaattaaaaaggatattcgttcgttg
atttcatcaaccagtgatactgaggataaaggtaaaaaagacgacttcttggacgttgat
tttgccgacatggatagtaaggatcaaaaagaaatgattgcaaacttggaagatcaaatg
cgagcggctgctaagaagctagacttcgaaaaagcagctaacttgcgagataccgtttta
gaattaaaagcacagattggttag
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integrated database retrieval system
