Pediococcus pentosaceus ATCC 25745: PEPE_0449
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Entry
PEPE_0449 CDS
T00409
Definition
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppe
Pediococcus pentosaceus ATCC 25745
Pathway
ppe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEPE_0449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppe03400
]
PEPE_0449
DNA repair and recombination proteins [BR:
ppe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEPE_0449
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PEPE_0449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_22
RsgA_GTPase
AAA_15
DnaJ_CXXCXGXG
AAA_14
AAA_23
AAA_33
AAA_25
APS_kinase
AAA_21
AAA_18
MMR_HSR1
NACHT
T2SSE
Viral_helicase1
cobW
AAA_24
DUF87
NTPase_1
MeaB
NB-ARC
Septin
Motif
Other DBs
NCBI-ProteinID:
ABJ67545
UniProt:
Q03GX7
LinkDB
All DBs
Position
499694..502537
Genome map
AA seq
947 aa
AA seq
DB search
MANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQP
ICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAKKGQHKKVFEKIKREGFVRVR
VDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIG
GEPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKT
LREGAIAPWNPISSQYYPTLLEQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHY
ENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLYMRELTCQTCHGYRLNRKALS
VKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTL
SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNT
LVVVEHDEDTMWAADYLIDIGPGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPV
PETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGVSGSGKSTLVNMVLKRVLAQK
LNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK
LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKG
KTIADILDMTVEEATDFFAPIPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLAS
ELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNGNTVLVIEHNLDVIKTADHLI
DLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaatgataaaattgttatccacggtgcacgagcacataatttaaagaatattgat
gttaccattccacgcgataaactagtggtggtgacagggttatctggatcaggaaagagt
tcattggcttttgataccctctatgctgaaggtcaacgacgctacgtagaaagtttgtca
gcgtatgctcgtcaatttttagggcaaatggataagccagatgttgattcaattgatgga
cttagtccggctatttcgattgatcaaaagacaacttctaaaaatcctcgttcaacagtc
gggaccgtaaccgaaattaatgattatttaagactattatgggcgcgagttggtcaacca
atctgtcccaatgatggtacaccgattaccagtcagacggtcgaacagatggtgaatcga
gttttggatttgccggaacgttccaaggtgcaaatcatctcaccgatcgtccgtgctaaa
aaaggccaacataaaaaggtttttgaaaaaatcaaacgtgaaggctttgtgcgggtacga
gtagatgacgaaaccatggatgttgaagaagtaccagaattggataagaacaaagttcac
accattgatattgtggtcgaccgtgtggtggttaaagacggaattcggtctcgtttattt
gattcatttgaagcagctttacgcctcagtaagggttatgctacagcagatgtgattggt
ggcgaaccaatcttgttctcagaacattattcctgtccggtttgtgggttcacagtggga
gaacttgaaccccgactattttcatttaatgccccttttggagcatgtcctgaatgtgat
ggattaggaattaaattggaagtggatgaagatttagtcattccggatccatctaagacg
ttacgtgaaggagcaattgcaccttggaatccgattagttcgcaatattatccaacctta
ctagaacaagctgctaaaagttttggaattgatatggatactccttttgaggatttacct
aaagcagatcgccagctcgttttatatggttctaaaggtaagaaattccatttccactat
gaaaatgattttggtggagttcgggatgtggattccgtatttgaaggtgtaatggttaac
attgatcgtcgctatcatgaaactaatagtgatttcacgcgagatcaaatgcggttatat
atgcgcgaattaacgtgccaaacttgtcatggttaccgtttgaatcgaaaagctttatca
gtaaaaattgatggaaagcatattgccgaaatttcagctttacccatcgatagtgccatg
gaatttttcggtaatttaaacttttcggagcaggatacagctgttgccactccaatctta
aaagaaatcaaggaccgtttgaatttcttacgtaacgtgggattggagtatctaactttg
agtcgctcggctcgaacactttcaggtggggaagcccaacggattcgtttggcgactcaa
attggctcgaatttatctggtgtactatatattttggatgaaccttcaattggtttacat
caaagggataacaatcgattaattagttcccttaaaaagatgcgggatttaggtaacacg
ctagtagttgttgaacatgatgaagatacgatgtgggctgctgattatcttattgatatt
ggaccaggagctggtgaaaatggcggtgaagtcatggcagctggtactcctaagcaagtg
gctaaaagtcgtaaatcactgacgggtaagtatctatccggaaagaaatttattccagtt
ccagaaactaggcgtacgggtaatggtcaatctattaaattaaaaggggtacaagaaaat
aaccttaaaaatattgatgttgacttcccattaggtgaatttgtcgctgtaacgggagtt
tctggctcaggtaaatctacgttagtcaatatggttttaaaacgagttttggctcaaaaa
ttaaaccataattctgaaaaaccaggtaaatataaatcggttagtggtattaaaaatatt
gaaaaagttatcaatattgaccaatctccaattggccggaccccacgaagtaatccggca
acttatacgagcgttttcgatgatataagaggcttatttgctcagactaatgaagctaaa
ctccgaggatatacgaagggtcgttttagttttaacgtcaagggtggacgctgtgaagca
tgtaagggtgacggaattctaaaaattgagatgaatttcttgccagatgtttacgttcct
tgtgaggtctgtcatggaacacgttataactcagaaacacttgaagttaagtacaaaggc
aagacaattgctgatatcttggatatgacggtggaagaagcaacagatttctttgctccc
atccctaagattgctcgtaaacttcaaaccattattgatgtaggattgggctacgtacat
ttaggacaatcagctactaccctatctggtggtgaagcgcaacgtatgaagttagcttcc
gaactacacaaaaaagcgaatggtaagaacttctatatcctagatgaaccaactactggt
ttgcatacagacgacatcaaacgtttgttagatgtattacaacgtttggtagataatggt
aatactgttttagtaatcgaacataatttagatgtaattaaaactgccgatcacttgatt
gatctgggtcctgaagggggcgctggtggtggacaagtggtggctgttggtacaccggaa
gccattgctgcggtacctgaaagctatactggtaaatatttgaaagaagttctggagcgt
gctcaagaacttagtcagaaataa
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